Hb_001787_070

Information

Type -
Description -
Location Contig1787: 102469-103023
Sequence    

Annotation

kegg
ID crb:CARUB_v10025857mg
description hypothetical protein
nr
ID XP_010441464.1
description PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
swissprot
ID P97868
description E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5
trembl
ID Q8L7L2
description DNA-binding protein-like (Fragment) OS=Arabidopsis thaliana GN=At5g47430 PE=2 SV=1
Gene Ontology
ID GO:0005488
description e3 ubiquitin-protein ligase rbbp6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001787_070 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
2 Hb_032920_040 0.1319013227 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
3 Hb_000003_760 0.1338431325 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
4 Hb_010142_040 0.1363882444 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
5 Hb_082225_010 0.1507943292 - - DWNN domain isoform 2 [Theobroma cacao]
6 Hb_031530_010 0.1564273488 - - DWNN domain isoform 2 [Theobroma cacao]
7 Hb_000836_160 0.1572332648 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
8 Hb_000827_090 0.166528977 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
9 Hb_125884_010 0.1707684151 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
10 Hb_000661_010 0.1708345548 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
11 Hb_001404_010 0.1717238982 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
12 Hb_000284_170 0.1789698235 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
13 Hb_033327_010 0.1799322446 - - SYM8 [Pisum sativum]
14 Hb_023768_020 0.1802181602 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000506_130 0.1808689196 - - DGCR14-related family protein [Populus trichocarpa]
16 Hb_001956_190 0.185520829 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
17 Hb_027905_010 0.1897096797 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_001404_030 0.1911563163 - - DWNN domain isoform 3 [Theobroma cacao]
19 Hb_019026_030 0.1915989535 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
20 Hb_000336_190 0.1919908407 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]

Gene co-expression network

sample Hb_001787_070 Hb_001787_070 Hb_032920_040 Hb_032920_040 Hb_001787_070--Hb_032920_040 Hb_000003_760 Hb_000003_760 Hb_001787_070--Hb_000003_760 Hb_010142_040 Hb_010142_040 Hb_001787_070--Hb_010142_040 Hb_082225_010 Hb_082225_010 Hb_001787_070--Hb_082225_010 Hb_031530_010 Hb_031530_010 Hb_001787_070--Hb_031530_010 Hb_000836_160 Hb_000836_160 Hb_001787_070--Hb_000836_160 Hb_032920_040--Hb_010142_040 Hb_000827_090 Hb_000827_090 Hb_032920_040--Hb_000827_090 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_032920_040--Hb_082225_010 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_000336_190 Hb_000336_190 Hb_000003_760--Hb_000336_190 Hb_111881_030 Hb_111881_030 Hb_000003_760--Hb_111881_030 Hb_009557_050 Hb_009557_050 Hb_000003_760--Hb_009557_050 Hb_001956_190 Hb_001956_190 Hb_000003_760--Hb_001956_190 Hb_178658_010 Hb_178658_010 Hb_000003_760--Hb_178658_010 Hb_010142_040--Hb_000827_090 Hb_001213_140 Hb_001213_140 Hb_010142_040--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_010142_040--Hb_000777_020 Hb_027905_010 Hb_027905_010 Hb_010142_040--Hb_027905_010 Hb_000221_280 Hb_000221_280 Hb_010142_040--Hb_000221_280 Hb_082225_010--Hb_031530_010 Hb_001404_010 Hb_001404_010 Hb_082225_010--Hb_001404_010 Hb_082225_010--Hb_000827_090 Hb_082225_010--Hb_010142_040 Hb_158926_010 Hb_158926_010 Hb_082225_010--Hb_158926_010 Hb_031530_010--Hb_001404_010 Hb_031530_010--Hb_032920_040 Hb_031530_010--Hb_000827_090 Hb_000313_190 Hb_000313_190 Hb_031530_010--Hb_000313_190 Hb_003023_060 Hb_003023_060 Hb_031530_010--Hb_003023_060 Hb_000836_160--Hb_032920_040 Hb_006538_030 Hb_006538_030 Hb_000836_160--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000836_160--Hb_000045_140 Hb_005976_040 Hb_005976_040 Hb_000836_160--Hb_005976_040 Hb_000532_030 Hb_000532_030 Hb_000836_160--Hb_000532_030 Hb_000836_160--Hb_082225_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.257283 6.65609 1.65249 4.24031 0.0917111 0.245001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.227304 0.803755 0 0.147243 0.170526

CAGE analysis