Hb_000836_160

Information

Type -
Description -
Location Contig836: 148050-148562
Sequence    

Annotation

kegg
ID rcu:RCOM_1616200
description zinc finger protein, putative
nr
ID KDP28595.1
description hypothetical protein JCGZ_14366 [Jatropha curcas]
swissprot
ID Q9SUS5
description E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis thaliana GN=RHA1B PE=2 SV=1
trembl
ID A0A067K8J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14366 PE=4 SV=1
Gene Ontology
ID GO:0005623
description e3 ubiquitin-protein ligase rha1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000836_160 0.0 - - hypothetical protein JCGZ_14366 [Jatropha curcas]
2 Hb_032920_040 0.1319665689 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
3 Hb_006538_030 0.1345944236 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
4 Hb_000045_140 0.1368690215 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
5 Hb_005976_040 0.1401806618 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
6 Hb_000532_030 0.1475010773 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]
7 Hb_082225_010 0.1540331406 - - DWNN domain isoform 2 [Theobroma cacao]
8 Hb_101058_020 0.1552100927 - - DWNN domain isoform 2 [Theobroma cacao]
9 Hb_000260_300 0.1564063673 - - calcium binding protein/cast, putative [Ricinus communis]
10 Hb_001787_070 0.1572332648 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
11 Hb_007120_010 0.1599908592 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]
12 Hb_002053_030 0.1610757256 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
13 Hb_124677_020 0.1617578599 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
14 Hb_006043_020 0.1623188092 - - PREDICTED: GEM-like protein 5 [Jatropha curcas]
15 Hb_033327_010 0.1624326111 - - SYM8 [Pisum sativum]
16 Hb_031530_010 0.163228269 - - DWNN domain isoform 2 [Theobroma cacao]
17 Hb_158926_010 0.1651021329 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
18 Hb_007894_020 0.1656210385 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
19 Hb_022137_020 0.1674907597 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
20 Hb_001863_270 0.1679195805 - - hypothetical protein JCGZ_15813 [Jatropha curcas]

Gene co-expression network

sample Hb_000836_160 Hb_000836_160 Hb_032920_040 Hb_032920_040 Hb_000836_160--Hb_032920_040 Hb_006538_030 Hb_006538_030 Hb_000836_160--Hb_006538_030 Hb_000045_140 Hb_000045_140 Hb_000836_160--Hb_000045_140 Hb_005976_040 Hb_005976_040 Hb_000836_160--Hb_005976_040 Hb_000532_030 Hb_000532_030 Hb_000836_160--Hb_000532_030 Hb_082225_010 Hb_082225_010 Hb_000836_160--Hb_082225_010 Hb_010142_040 Hb_010142_040 Hb_032920_040--Hb_010142_040 Hb_000827_090 Hb_000827_090 Hb_032920_040--Hb_000827_090 Hb_000988_020 Hb_000988_020 Hb_032920_040--Hb_000988_020 Hb_032920_040--Hb_082225_010 Hb_000805_150 Hb_000805_150 Hb_032920_040--Hb_000805_150 Hb_002053_030 Hb_002053_030 Hb_032920_040--Hb_002053_030 Hb_006538_030--Hb_000532_030 Hb_000345_500 Hb_000345_500 Hb_006538_030--Hb_000345_500 Hb_000086_610 Hb_000086_610 Hb_006538_030--Hb_000086_610 Hb_006043_020 Hb_006043_020 Hb_006538_030--Hb_006043_020 Hb_004787_100 Hb_004787_100 Hb_006538_030--Hb_004787_100 Hb_181824_010 Hb_181824_010 Hb_000045_140--Hb_181824_010 Hb_000045_140--Hb_000532_030 Hb_000283_100 Hb_000283_100 Hb_000045_140--Hb_000283_100 Hb_010126_030 Hb_010126_030 Hb_000045_140--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000045_140--Hb_001989_060 Hb_007120_010 Hb_007120_010 Hb_000045_140--Hb_007120_010 Hb_005976_040--Hb_006043_020 Hb_018563_020 Hb_018563_020 Hb_005976_040--Hb_018563_020 Hb_005976_040--Hb_002053_030 Hb_000260_300 Hb_000260_300 Hb_005976_040--Hb_000260_300 Hb_005496_070 Hb_005496_070 Hb_005976_040--Hb_005496_070 Hb_000532_030--Hb_000283_100 Hb_000532_030--Hb_000805_150 Hb_001863_270 Hb_001863_270 Hb_000532_030--Hb_001863_270 Hb_000532_030--Hb_004787_100 Hb_031530_010 Hb_031530_010 Hb_082225_010--Hb_031530_010 Hb_001404_010 Hb_001404_010 Hb_082225_010--Hb_001404_010 Hb_082225_010--Hb_000827_090 Hb_082225_010--Hb_010142_040 Hb_158926_010 Hb_158926_010 Hb_082225_010--Hb_158926_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.98 824.705 351.435 316.565 11.7359 28.326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.2974 106.889 18.2534 10.4435 13.1175

CAGE analysis