Hb_001459_040

Information

Type -
Description -
Location Contig1459: 26508-29364
Sequence    

Annotation

kegg
ID mtr:MTR_8g039620
description Ankyrin repeat-containing protein
nr
ID XP_003627889.1
description Ankyrin repeat-containing protein [Medicago truncatula]
swissprot
ID P16157
description Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3
trembl
ID G7LGS5
description Ankyrin repeat protein OS=Medicago truncatula GN=MTR_8g039620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11850: 26634-27537 , PASA_asmbl_11852: 28421-28853
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001459_040 0.0 - - Ankyrin repeat-containing protein [Medicago truncatula]
2 Hb_113676_010 0.1425324652 - - PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
3 Hb_173271_010 0.1528706058 - - Disease resistance protein RPP13, putative [Ricinus communis]
4 Hb_137349_010 0.1740690374 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
5 Hb_055277_010 0.1742240752 - - PREDICTED: coenzyme Q-binding protein COQ10 homolog, mitochondrial [Jatropha curcas]
6 Hb_108670_010 0.1761964413 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
7 Hb_004112_060 0.1833653267 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
8 Hb_001054_110 0.1863906664 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
9 Hb_001775_090 0.1865914769 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
10 Hb_064885_010 0.188020238 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
11 Hb_000532_150 0.1896490877 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
12 Hb_001514_250 0.1946907303 - - GAST1 protein precursor, putative [Ricinus communis]
13 Hb_172983_010 0.195963772 - - conserved hypothetical protein [Ricinus communis]
14 Hb_053073_010 0.1967404753 - - -
15 Hb_136973_020 0.20578464 - - -
16 Hb_000248_080 0.206604177 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_002849_010 0.2072386139 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
18 Hb_011826_010 0.2076512609 - - Disease resistance protein RPM1, putative [Ricinus communis]
19 Hb_009083_020 0.2089542339 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
20 Hb_160950_010 0.2102008792 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]

Gene co-expression network

sample Hb_001459_040 Hb_001459_040 Hb_113676_010 Hb_113676_010 Hb_001459_040--Hb_113676_010 Hb_173271_010 Hb_173271_010 Hb_001459_040--Hb_173271_010 Hb_137349_010 Hb_137349_010 Hb_001459_040--Hb_137349_010 Hb_055277_010 Hb_055277_010 Hb_001459_040--Hb_055277_010 Hb_108670_010 Hb_108670_010 Hb_001459_040--Hb_108670_010 Hb_004112_060 Hb_004112_060 Hb_001459_040--Hb_004112_060 Hb_158349_010 Hb_158349_010 Hb_113676_010--Hb_158349_010 Hb_000532_150 Hb_000532_150 Hb_113676_010--Hb_000532_150 Hb_033327_010 Hb_033327_010 Hb_113676_010--Hb_033327_010 Hb_113676_010--Hb_173271_010 Hb_113676_010--Hb_108670_010 Hb_001775_090 Hb_001775_090 Hb_173271_010--Hb_001775_090 Hb_000162_130 Hb_000162_130 Hb_173271_010--Hb_000162_130 Hb_005048_120 Hb_005048_120 Hb_173271_010--Hb_005048_120 Hb_002133_010 Hb_002133_010 Hb_173271_010--Hb_002133_010 Hb_064885_010 Hb_064885_010 Hb_173271_010--Hb_064885_010 Hb_000628_050 Hb_000628_050 Hb_137349_010--Hb_000628_050 Hb_004241_190 Hb_004241_190 Hb_137349_010--Hb_004241_190 Hb_005773_010 Hb_005773_010 Hb_137349_010--Hb_005773_010 Hb_173029_010 Hb_173029_010 Hb_137349_010--Hb_173029_010 Hb_000061_060 Hb_000061_060 Hb_137349_010--Hb_000061_060 Hb_000668_220 Hb_000668_220 Hb_137349_010--Hb_000668_220 Hb_002849_010 Hb_002849_010 Hb_055277_010--Hb_002849_010 Hb_136973_020 Hb_136973_020 Hb_055277_010--Hb_136973_020 Hb_005928_010 Hb_005928_010 Hb_055277_010--Hb_005928_010 Hb_055277_010--Hb_108670_010 Hb_055277_010--Hb_064885_010 Hb_055277_010--Hb_000628_050 Hb_108670_010--Hb_005773_010 Hb_000072_010 Hb_000072_010 Hb_108670_010--Hb_000072_010 Hb_104855_010 Hb_104855_010 Hb_108670_010--Hb_104855_010 Hb_108670_010--Hb_000628_050 Hb_005170_020 Hb_005170_020 Hb_108670_010--Hb_005170_020 Hb_000808_120 Hb_000808_120 Hb_004112_060--Hb_000808_120 Hb_002243_050 Hb_002243_050 Hb_004112_060--Hb_002243_050 Hb_053073_010 Hb_053073_010 Hb_004112_060--Hb_053073_010 Hb_001514_250 Hb_001514_250 Hb_004112_060--Hb_001514_250 Hb_071781_010 Hb_071781_010 Hb_004112_060--Hb_071781_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0934742 1.55612 2.33244 2.54129 0.0333832 0.221359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0813843 0.128036 0 0 0

CAGE analysis