Hb_002243_050

Information

Type -
Description -
Location Contig2243: 92781-93772
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00730g
description DMI1 family protein
nr
ID XP_012066655.1
description PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
swissprot
ID Q6RHR6
description Ion channel DMI1 OS=Medicago truncatula GN=DMI1 PE=2 SV=1
trembl
ID A0A067L5C3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23339: 91894-94039 , PASA_asmbl_23340: 92180-92514
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002243_050 0.0 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
2 Hb_000816_190 0.2009642906 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004117_330 0.2031894507 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000649_340 0.2033545272 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
5 Hb_007575_090 0.2050215645 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
6 Hb_054865_160 0.2103049565 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
7 Hb_001269_090 0.2153791885 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
8 Hb_066514_010 0.2160191398 - - hypothetical protein RCOM_0204720 [Ricinus communis]
9 Hb_002675_090 0.2184426746 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004112_060 0.2188395076 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
11 Hb_128473_010 0.2189109181 - - -
12 Hb_011918_010 0.2217939129 - - hypothetical protein glysoja_041948 [Glycine soja]
13 Hb_000532_150 0.2352816204 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
14 Hb_000742_190 0.2357077395 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_002490_030 0.2357085703 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002272_200 0.2375786598 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
17 Hb_008185_020 0.2380996599 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
18 Hb_000732_240 0.2382796583 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
19 Hb_000302_100 0.2387057474 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
20 Hb_071781_010 0.239147966 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]

Gene co-expression network

sample Hb_002243_050 Hb_002243_050 Hb_000816_190 Hb_000816_190 Hb_002243_050--Hb_000816_190 Hb_004117_330 Hb_004117_330 Hb_002243_050--Hb_004117_330 Hb_000649_340 Hb_000649_340 Hb_002243_050--Hb_000649_340 Hb_007575_090 Hb_007575_090 Hb_002243_050--Hb_007575_090 Hb_054865_160 Hb_054865_160 Hb_002243_050--Hb_054865_160 Hb_001269_090 Hb_001269_090 Hb_002243_050--Hb_001269_090 Hb_002490_030 Hb_002490_030 Hb_000816_190--Hb_002490_030 Hb_002900_100 Hb_002900_100 Hb_000816_190--Hb_002900_100 Hb_066514_010 Hb_066514_010 Hb_000816_190--Hb_066514_010 Hb_008119_030 Hb_008119_030 Hb_000816_190--Hb_008119_030 Hb_001366_170 Hb_001366_170 Hb_000816_190--Hb_001366_170 Hb_011918_010 Hb_011918_010 Hb_000816_190--Hb_011918_010 Hb_000413_080 Hb_000413_080 Hb_004117_330--Hb_000413_080 Hb_004117_330--Hb_007575_090 Hb_005144_170 Hb_005144_170 Hb_004117_330--Hb_005144_170 Hb_008185_020 Hb_008185_020 Hb_004117_330--Hb_008185_020 Hb_000302_100 Hb_000302_100 Hb_004117_330--Hb_000302_100 Hb_004117_330--Hb_066514_010 Hb_123301_010 Hb_123301_010 Hb_000649_340--Hb_123301_010 Hb_128473_010 Hb_128473_010 Hb_000649_340--Hb_128473_010 Hb_000776_060 Hb_000776_060 Hb_000649_340--Hb_000776_060 Hb_001195_410 Hb_001195_410 Hb_000649_340--Hb_001195_410 Hb_000028_260 Hb_000028_260 Hb_000649_340--Hb_000028_260 Hb_000046_270 Hb_000046_270 Hb_000649_340--Hb_000046_270 Hb_007575_090--Hb_011918_010 Hb_007741_090 Hb_007741_090 Hb_007575_090--Hb_007741_090 Hb_007575_090--Hb_066514_010 Hb_007575_090--Hb_002900_100 Hb_000302_110 Hb_000302_110 Hb_007575_090--Hb_000302_110 Hb_003058_230 Hb_003058_230 Hb_054865_160--Hb_003058_230 Hb_053709_040 Hb_053709_040 Hb_054865_160--Hb_053709_040 Hb_054865_160--Hb_008185_020 Hb_054865_160--Hb_000816_190 Hb_054865_160--Hb_007575_090 Hb_054865_160--Hb_011918_010 Hb_000532_150 Hb_000532_150 Hb_001269_090--Hb_000532_150 Hb_007163_050 Hb_007163_050 Hb_001269_090--Hb_007163_050 Hb_049915_010 Hb_049915_010 Hb_001269_090--Hb_049915_010 Hb_023768_010 Hb_023768_010 Hb_001269_090--Hb_023768_010 Hb_007749_020 Hb_007749_020 Hb_001269_090--Hb_007749_020 Hb_001357_280 Hb_001357_280 Hb_001269_090--Hb_001357_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28515 6.13925 6.30287 24.9947 2.30814 1.92455
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70301 2.52813 0 0.251652 0.950545

CAGE analysis