Hb_000046_270

Information

Type -
Description -
Location Contig46: 219529-223787
Sequence    

Annotation

kegg
ID rcu:RCOM_0679670
description sodium/hydrogen exchanger, putative
nr
ID XP_012069415.1
description PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
swissprot
ID Q56XP4
description Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=2 SV=2
trembl
ID B9RSZ3
description Sodium/hydrogen exchanger OS=Ricinus communis GN=RCOM_0679670 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_270 0.0 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
2 Hb_000649_340 0.1992354414 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
3 Hb_000483_400 0.2115737254 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
4 Hb_004453_070 0.214546886 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
5 Hb_128473_010 0.2300828539 - - -
6 Hb_062038_010 0.2401699215 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
7 Hb_000776_060 0.2421647114 - - histone H4 [Zea mays]
8 Hb_000367_070 0.2551974466 - - hypothetical protein JCGZ_11697 [Jatropha curcas]
9 Hb_001597_050 0.255369131 - - -
10 Hb_001377_280 0.2566189508 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Populus euphratica]
11 Hb_123301_010 0.2570766611 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001195_410 0.2594575283 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
13 Hb_000796_020 0.2600533794 - - ADP-ribosylation factor [Phaseolus vulgaris]
14 Hb_002539_100 0.2608529537 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
15 Hb_001771_080 0.2626456454 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
16 Hb_000028_260 0.2647840718 - - hypothetical protein glysoja_041948 [Glycine soja]
17 Hb_001638_180 0.2654383264 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
18 Hb_000020_100 0.2688847351 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
19 Hb_034299_070 0.2694996176 - - actin binding protein, putative [Ricinus communis]
20 Hb_131684_010 0.2724211969 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000046_270 Hb_000046_270 Hb_000649_340 Hb_000649_340 Hb_000046_270--Hb_000649_340 Hb_000483_400 Hb_000483_400 Hb_000046_270--Hb_000483_400 Hb_004453_070 Hb_004453_070 Hb_000046_270--Hb_004453_070 Hb_128473_010 Hb_128473_010 Hb_000046_270--Hb_128473_010 Hb_062038_010 Hb_062038_010 Hb_000046_270--Hb_062038_010 Hb_000776_060 Hb_000776_060 Hb_000046_270--Hb_000776_060 Hb_123301_010 Hb_123301_010 Hb_000649_340--Hb_123301_010 Hb_000649_340--Hb_128473_010 Hb_000649_340--Hb_000776_060 Hb_001195_410 Hb_001195_410 Hb_000649_340--Hb_001195_410 Hb_000028_260 Hb_000028_260 Hb_000649_340--Hb_000028_260 Hb_000796_020 Hb_000796_020 Hb_000483_400--Hb_000796_020 Hb_000240_120 Hb_000240_120 Hb_000483_400--Hb_000240_120 Hb_175933_010 Hb_175933_010 Hb_000483_400--Hb_175933_010 Hb_000483_400--Hb_004453_070 Hb_000683_100 Hb_000683_100 Hb_000483_400--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_000483_400--Hb_000217_020 Hb_004453_070--Hb_001195_410 Hb_004453_070--Hb_000796_020 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_000062_090 Hb_000062_090 Hb_004453_070--Hb_000062_090 Hb_000261_170 Hb_000261_170 Hb_128473_010--Hb_000261_170 Hb_073799_010 Hb_073799_010 Hb_128473_010--Hb_073799_010 Hb_000311_040 Hb_000311_040 Hb_128473_010--Hb_000311_040 Hb_008185_020 Hb_008185_020 Hb_128473_010--Hb_008185_020 Hb_128473_010--Hb_000483_400 Hb_007553_020 Hb_007553_020 Hb_062038_010--Hb_007553_020 Hb_001234_070 Hb_001234_070 Hb_062038_010--Hb_001234_070 Hb_003582_070 Hb_003582_070 Hb_062038_010--Hb_003582_070 Hb_002686_180 Hb_002686_180 Hb_062038_010--Hb_002686_180 Hb_000356_090 Hb_000356_090 Hb_062038_010--Hb_000356_090 Hb_001511_260 Hb_001511_260 Hb_062038_010--Hb_001511_260 Hb_000776_060--Hb_000796_020 Hb_000776_060--Hb_000062_090 Hb_030992_010 Hb_030992_010 Hb_000776_060--Hb_030992_010 Hb_012760_050 Hb_012760_050 Hb_000776_060--Hb_012760_050 Hb_000776_060--Hb_001195_410 Hb_006711_090 Hb_006711_090 Hb_000776_060--Hb_006711_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447236 0.0714311 0.0964991 0.330366 0 0.0204203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0719343 0.113198 0.0714444 0.00750987 0

CAGE analysis