Hb_062038_010

Information

Type transcription factor
Description TF Family: B3
Location Contig62038: 2367-3701
Sequence    

Annotation

kegg
ID vvi:104882266
description uncharacterized LOC104882266
nr
ID XP_010663044.1
description PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
swissprot
ID Q5N6V0
description B3 domain-containing protein Os01g0905400 OS=Oryza sativa subsp. japonica GN=Os01g0905400 PE=2 SV=1
trembl
ID D7SHB6
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g10080 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing protein os02g0598200-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062038_010 0.0 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
2 Hb_007553_020 0.1650988111 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001234_070 0.1923876168 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
4 Hb_003582_070 0.1938955553 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002686_180 0.1956737764 - - PREDICTED: early nodulin-93-like [Populus euphratica]
6 Hb_000356_090 0.2017861859 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
7 Hb_001511_260 0.2031470705 - - tryptophan biosynthesis protein, putative [Ricinus communis]
8 Hb_001322_070 0.2037860266 - - protein with unknown function [Ricinus communis]
9 Hb_001863_130 0.2042797122 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
10 Hb_098315_020 0.2043833889 - - hypothetical protein M569_15712 [Genlisea aurea]
11 Hb_171900_060 0.204716238 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
12 Hb_001771_080 0.208384575 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Amborella trichopoda]
13 Hb_002249_070 0.210357654 - - gcn4-complementing protein, putative [Ricinus communis]
14 Hb_000084_260 0.2105001052 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
15 Hb_000329_270 0.2125121589 - - PREDICTED: spindle and kinetochore-associated protein 1 homolog [Jatropha curcas]
16 Hb_002539_100 0.2132436403 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
17 Hb_110390_010 0.2143208745 - - hypothetical protein JCGZ_19741 [Jatropha curcas]
18 Hb_002681_200 0.2159756073 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Jatropha curcas]
19 Hb_178227_010 0.2171889495 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
20 Hb_003567_030 0.2176796995 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_062038_010 Hb_062038_010 Hb_007553_020 Hb_007553_020 Hb_062038_010--Hb_007553_020 Hb_001234_070 Hb_001234_070 Hb_062038_010--Hb_001234_070 Hb_003582_070 Hb_003582_070 Hb_062038_010--Hb_003582_070 Hb_002686_180 Hb_002686_180 Hb_062038_010--Hb_002686_180 Hb_000356_090 Hb_000356_090 Hb_062038_010--Hb_000356_090 Hb_001511_260 Hb_001511_260 Hb_062038_010--Hb_001511_260 Hb_171900_060 Hb_171900_060 Hb_007553_020--Hb_171900_060 Hb_012340_050 Hb_012340_050 Hb_007553_020--Hb_012340_050 Hb_007553_020--Hb_001234_070 Hb_007553_020--Hb_003582_070 Hb_001863_130 Hb_001863_130 Hb_007553_020--Hb_001863_130 Hb_010560_030 Hb_010560_030 Hb_007553_020--Hb_010560_030 Hb_001234_070--Hb_003582_070 Hb_001234_070--Hb_171900_060 Hb_000193_110 Hb_000193_110 Hb_001234_070--Hb_000193_110 Hb_004041_020 Hb_004041_020 Hb_001234_070--Hb_004041_020 Hb_003362_030 Hb_003362_030 Hb_001234_070--Hb_003362_030 Hb_000832_190 Hb_000832_190 Hb_001234_070--Hb_000832_190 Hb_001188_030 Hb_001188_030 Hb_003582_070--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_003582_070--Hb_015299_030 Hb_003582_070--Hb_001863_130 Hb_003582_070--Hb_000193_110 Hb_003582_070--Hb_003362_030 Hb_000134_320 Hb_000134_320 Hb_002686_180--Hb_000134_320 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_002686_180--Hb_015299_030 Hb_001431_080 Hb_001431_080 Hb_002686_180--Hb_001431_080 Hb_132840_140 Hb_132840_140 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020 Hb_000087_130 Hb_000087_130 Hb_000356_090--Hb_000087_130 Hb_005391_030 Hb_005391_030 Hb_000356_090--Hb_005391_030 Hb_006915_040 Hb_006915_040 Hb_000356_090--Hb_006915_040 Hb_000189_240 Hb_000189_240 Hb_000356_090--Hb_000189_240 Hb_000258_250 Hb_000258_250 Hb_000356_090--Hb_000258_250 Hb_000317_070 Hb_000317_070 Hb_000356_090--Hb_000317_070 Hb_000803_200 Hb_000803_200 Hb_001511_260--Hb_000803_200 Hb_006326_040 Hb_006326_040 Hb_001511_260--Hb_006326_040 Hb_000392_340 Hb_000392_340 Hb_001511_260--Hb_000392_340 Hb_001511_260--Hb_000832_190 Hb_000359_150 Hb_000359_150 Hb_001511_260--Hb_000359_150 Hb_002303_060 Hb_002303_060 Hb_001511_260--Hb_002303_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.403278 0.276989 0.793127 1.14633 0.0629926 0.143245
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.615783 1.25113 0.593892 0.324683 0

CAGE analysis