Hb_000134_320

Information

Type -
Description -
Location Contig134: 276565-278234
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013450mg
description hypothetical protein
nr
ID XP_007218609.1
description hypothetical protein PRUPE_ppa013450mg [Prunus persica]
swissprot
ID Q9M573
description 60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1
trembl
ID M5XE71
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013450mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l31

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09626: 276453-278297
cDNA
(Sanger)
(ID:Location)		 005_I08.ab1: 276459-278295 , 006_P09.ab1: 277960-278297 , 021_B19.ab1: 276501-278297 , 021_G24.ab1: 276485-278293 , 032_D10.ab1: 277529-278297 , 044_G02.ab1: 277591-278297 , 050_H20.ab1: 276497-278297

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000134_320 0.0 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
2 Hb_132840_140 0.0918768791 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
3 Hb_001754_250 0.0952040644 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
4 Hb_002686_180 0.1035760888 - - PREDICTED: early nodulin-93-like [Populus euphratica]
5 Hb_003053_010 0.1065698174 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
6 Hb_000260_550 0.1081110073 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
7 Hb_002811_170 0.1122960117 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
8 Hb_001096_090 0.1143664431 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
9 Hb_001141_140 0.1149602589 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
10 Hb_000506_070 0.1159245608 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
11 Hb_000735_040 0.1173973116 - - 60S ribosomal protein L32A [Hevea brasiliensis]
12 Hb_000731_190 0.1191820627 - - PREDICTED: cardiolipin synthase (CMP-forming), mitochondrial [Jatropha curcas]
13 Hb_000035_370 0.1196303826 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007044_130 0.1217989644 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
15 Hb_006925_040 0.1219233541 - - 60S ribosomal protein L24-1 isoform 2 [Theobroma cacao]
16 Hb_001016_150 0.122478233 - - Rop1 [Hevea brasiliensis]
17 Hb_001979_040 0.1229367694 - - PREDICTED: 60S ribosomal protein L21-1-like [Gossypium raimondii]
18 Hb_001143_220 0.1247276286 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
19 Hb_003185_110 0.1254054387 - - PREDICTED: cytochrome b-c1 complex subunit 7-2 [Nelumbo nucifera]
20 Hb_003018_020 0.1275467738 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]

Gene co-expression network

sample Hb_000134_320 Hb_000134_320 Hb_132840_140 Hb_132840_140 Hb_000134_320--Hb_132840_140 Hb_001754_250 Hb_001754_250 Hb_000134_320--Hb_001754_250 Hb_002686_180 Hb_002686_180 Hb_000134_320--Hb_002686_180 Hb_003053_010 Hb_003053_010 Hb_000134_320--Hb_003053_010 Hb_000260_550 Hb_000260_550 Hb_000134_320--Hb_000260_550 Hb_002811_170 Hb_002811_170 Hb_000134_320--Hb_002811_170 Hb_001431_080 Hb_001431_080 Hb_132840_140--Hb_001431_080 Hb_000676_310 Hb_000676_310 Hb_132840_140--Hb_000676_310 Hb_004223_040 Hb_004223_040 Hb_132840_140--Hb_004223_040 Hb_001188_030 Hb_001188_030 Hb_132840_140--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_132840_140--Hb_015299_030 Hb_001754_250--Hb_000260_550 Hb_001143_220 Hb_001143_220 Hb_001754_250--Hb_001143_220 Hb_001459_080 Hb_001459_080 Hb_001754_250--Hb_001459_080 Hb_168878_010 Hb_168878_010 Hb_001754_250--Hb_168878_010 Hb_000694_040 Hb_000694_040 Hb_001754_250--Hb_000694_040 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_002686_180--Hb_015299_030 Hb_002686_180--Hb_001431_080 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020 Hb_006925_040 Hb_006925_040 Hb_003053_010--Hb_006925_040 Hb_001141_140 Hb_001141_140 Hb_003053_010--Hb_001141_140 Hb_003185_110 Hb_003185_110 Hb_003053_010--Hb_003185_110 Hb_000025_620 Hb_000025_620 Hb_003053_010--Hb_000025_620 Hb_000297_230 Hb_000297_230 Hb_003053_010--Hb_000297_230 Hb_001780_040 Hb_001780_040 Hb_003053_010--Hb_001780_040 Hb_000096_170 Hb_000096_170 Hb_000260_550--Hb_000096_170 Hb_007044_130 Hb_007044_130 Hb_000260_550--Hb_007044_130 Hb_004453_170 Hb_004453_170 Hb_000260_550--Hb_004453_170 Hb_000127_180 Hb_000127_180 Hb_000260_550--Hb_000127_180 Hb_002518_080 Hb_002518_080 Hb_000260_550--Hb_002518_080 Hb_124953_020 Hb_124953_020 Hb_000260_550--Hb_124953_020 Hb_007747_050 Hb_007747_050 Hb_002811_170--Hb_007747_050 Hb_000836_470 Hb_000836_470 Hb_002811_170--Hb_000836_470 Hb_001931_010 Hb_001931_010 Hb_002811_170--Hb_001931_010 Hb_001863_430 Hb_001863_430 Hb_002811_170--Hb_001863_430 Hb_001728_030 Hb_001728_030 Hb_002811_170--Hb_001728_030 Hb_001016_150 Hb_001016_150 Hb_002811_170--Hb_001016_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.65 66.1067 256.381 95.1317 60.5323 96.022
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
169.285 470.778 128.799 133.907 50.9538

CAGE analysis