Hb_002686_180

Information

Type -
Description -
Location Contig2686: 118533-120865
Sequence    

Annotation

kegg
ID pop:POPTR_0019s04930g
description POPTRDRAFT_573913; hypothetical protein
nr
ID XP_011010128.1
description PREDICTED: early nodulin-93-like [Populus euphratica]
swissprot
ID Q02921
description Early nodulin-93 OS=Glycine max PE=2 SV=1
trembl
ID A9PA20
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s04930g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28016: 118442-120939 , PASA_asmbl_28017: 120003-120344
cDNA
(Sanger)
(ID:Location)		 004_C21.ab1: 118723-120939 , 029_F23.ab1: 118881-120895 , 046_I21.ab1: 118545-120700 , 050_I17.ab1: 118676-120895 , 052_O05.ab1: 118670-120846

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_180 0.0 - - PREDICTED: early nodulin-93-like [Populus euphratica]
2 Hb_000134_320 0.1035760888 - - hypothetical protein PRUPE_ppa013450mg [Prunus persica]
3 Hb_024074_010 0.1105329422 - - PREDICTED: cytochrome c [Jatropha curcas]
4 Hb_015299_030 0.1111627195 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
5 Hb_001431_080 0.112764625 - - 40S ribosomal protein S11, putative [Ricinus communis]
6 Hb_132840_140 0.1146207028 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
7 Hb_098315_020 0.1206674504 - - hypothetical protein M569_15712 [Genlisea aurea]
8 Hb_001188_030 0.1222499875 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
9 Hb_003582_070 0.1229155686 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001234_070 0.1309099372 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
11 Hb_001096_090 0.1338205211 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
12 Hb_000258_250 0.1340730793 - - Origin recognition complex subunit, putative [Ricinus communis]
13 Hb_001718_030 0.1344873684 - - PREDICTED: calcineurin B-like protein 9 isoform X1 [Jatropha curcas]
14 Hb_000340_500 0.1364785596 - - PREDICTED: aldo-keto reductase-like [Jatropha curcas]
15 Hb_002260_010 0.1412625195 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
16 Hb_000676_390 0.1425084279 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
17 Hb_002811_170 0.1430495494 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
18 Hb_006028_020 0.1441934268 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
19 Hb_000189_540 0.1444553459 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
20 Hb_000302_140 0.1448043536 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002686_180 Hb_002686_180 Hb_000134_320 Hb_000134_320 Hb_002686_180--Hb_000134_320 Hb_024074_010 Hb_024074_010 Hb_002686_180--Hb_024074_010 Hb_015299_030 Hb_015299_030 Hb_002686_180--Hb_015299_030 Hb_001431_080 Hb_001431_080 Hb_002686_180--Hb_001431_080 Hb_132840_140 Hb_132840_140 Hb_002686_180--Hb_132840_140 Hb_098315_020 Hb_098315_020 Hb_002686_180--Hb_098315_020 Hb_000134_320--Hb_132840_140 Hb_001754_250 Hb_001754_250 Hb_000134_320--Hb_001754_250 Hb_003053_010 Hb_003053_010 Hb_000134_320--Hb_003053_010 Hb_000260_550 Hb_000260_550 Hb_000134_320--Hb_000260_550 Hb_002811_170 Hb_002811_170 Hb_000134_320--Hb_002811_170 Hb_000302_140 Hb_000302_140 Hb_024074_010--Hb_000302_140 Hb_002260_010 Hb_002260_010 Hb_024074_010--Hb_002260_010 Hb_000731_190 Hb_000731_190 Hb_024074_010--Hb_000731_190 Hb_001053_140 Hb_001053_140 Hb_024074_010--Hb_001053_140 Hb_004057_010 Hb_004057_010 Hb_024074_010--Hb_004057_010 Hb_131181_010 Hb_131181_010 Hb_024074_010--Hb_131181_010 Hb_001188_030 Hb_001188_030 Hb_015299_030--Hb_001188_030 Hb_015299_030--Hb_001431_080 Hb_015299_030--Hb_002811_170 Hb_000946_090 Hb_000946_090 Hb_015299_030--Hb_000946_090 Hb_001931_010 Hb_001931_010 Hb_015299_030--Hb_001931_010 Hb_015299_030--Hb_098315_020 Hb_001431_080--Hb_001188_030 Hb_001718_030 Hb_001718_030 Hb_001431_080--Hb_001718_030 Hb_001431_080--Hb_132840_140 Hb_000676_310 Hb_000676_310 Hb_001431_080--Hb_000676_310 Hb_000676_390 Hb_000676_390 Hb_001431_080--Hb_000676_390 Hb_132840_140--Hb_000676_310 Hb_004223_040 Hb_004223_040 Hb_132840_140--Hb_004223_040 Hb_132840_140--Hb_001188_030 Hb_132840_140--Hb_015299_030 Hb_002060_010 Hb_002060_010 Hb_098315_020--Hb_002060_010 Hb_005460_060 Hb_005460_060 Hb_098315_020--Hb_005460_060 Hb_004984_030 Hb_004984_030 Hb_098315_020--Hb_004984_030 Hb_098315_020--Hb_001188_030 Hb_098315_020--Hb_001718_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.1469 59.6636 270.82 155.065 49.2814 41.8612
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
162.519 450.512 127.336 100.301 45.1506

CAGE analysis