Hb_007553_020

Information

Type -
Description -
Location Contig7553: 4461-4910
Sequence    

Annotation

kegg
ID rcu:RCOM_1437200
description hypothetical protein
nr
ID XP_002512603.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C7J9
description F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1
trembl
ID B9RFT4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007553_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_171900_060 0.1265504686 - - PREDICTED: uncharacterized protein LOC105643368 [Jatropha curcas]
3 Hb_012340_050 0.1422460699 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
4 Hb_001234_070 0.1474541451 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]
5 Hb_003582_070 0.1516106076 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001863_130 0.1525869238 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
7 Hb_010560_030 0.160057103 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
8 Hb_000826_100 0.1603308722 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas]
9 Hb_178227_010 0.1605885191 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
10 Hb_098315_020 0.1612100117 - - hypothetical protein M569_15712 [Genlisea aurea]
11 Hb_001322_070 0.1613931513 - - protein with unknown function [Ricinus communis]
12 Hb_000407_070 0.1618101156 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
13 Hb_000107_300 0.1649743398 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
14 Hb_062038_010 0.1650988111 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC104882266 isoform X2 [Vitis vinifera]
15 Hb_002314_010 0.1667124317 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
16 Hb_004230_020 0.1671379405 - - PREDICTED: uncharacterized protein LOC105648105 [Jatropha curcas]
17 Hb_000923_090 0.1714466989 - - -
18 Hb_004093_020 0.1721587976 - - Calcium-binding EF-hand family protein [Theobroma cacao]
19 Hb_150930_010 0.1725075187 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003106_220 0.1740199446 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_007553_020 Hb_007553_020 Hb_171900_060 Hb_171900_060 Hb_007553_020--Hb_171900_060 Hb_012340_050 Hb_012340_050 Hb_007553_020--Hb_012340_050 Hb_001234_070 Hb_001234_070 Hb_007553_020--Hb_001234_070 Hb_003582_070 Hb_003582_070 Hb_007553_020--Hb_003582_070 Hb_001863_130 Hb_001863_130 Hb_007553_020--Hb_001863_130 Hb_010560_030 Hb_010560_030 Hb_007553_020--Hb_010560_030 Hb_002105_100 Hb_002105_100 Hb_171900_060--Hb_002105_100 Hb_171900_060--Hb_001234_070 Hb_021068_040 Hb_021068_040 Hb_171900_060--Hb_021068_040 Hb_000359_150 Hb_000359_150 Hb_171900_060--Hb_000359_150 Hb_003567_030 Hb_003567_030 Hb_171900_060--Hb_003567_030 Hb_006846_130 Hb_006846_130 Hb_171900_060--Hb_006846_130 Hb_000107_300 Hb_000107_300 Hb_012340_050--Hb_000107_300 Hb_005144_010 Hb_005144_010 Hb_012340_050--Hb_005144_010 Hb_000826_100 Hb_000826_100 Hb_012340_050--Hb_000826_100 Hb_002314_010 Hb_002314_010 Hb_012340_050--Hb_002314_010 Hb_000365_250 Hb_000365_250 Hb_012340_050--Hb_000365_250 Hb_006452_110 Hb_006452_110 Hb_012340_050--Hb_006452_110 Hb_001234_070--Hb_003582_070 Hb_000193_110 Hb_000193_110 Hb_001234_070--Hb_000193_110 Hb_004041_020 Hb_004041_020 Hb_001234_070--Hb_004041_020 Hb_003362_030 Hb_003362_030 Hb_001234_070--Hb_003362_030 Hb_000832_190 Hb_000832_190 Hb_001234_070--Hb_000832_190 Hb_001188_030 Hb_001188_030 Hb_003582_070--Hb_001188_030 Hb_015299_030 Hb_015299_030 Hb_003582_070--Hb_015299_030 Hb_003582_070--Hb_001863_130 Hb_003582_070--Hb_000193_110 Hb_003582_070--Hb_003362_030 Hb_002909_020 Hb_002909_020 Hb_001863_130--Hb_002909_020 Hb_001511_260 Hb_001511_260 Hb_001863_130--Hb_001511_260 Hb_001377_450 Hb_001377_450 Hb_001863_130--Hb_001377_450 Hb_001863_130--Hb_001234_070 Hb_001863_130--Hb_010560_030 Hb_001053_140 Hb_001053_140 Hb_010560_030--Hb_001053_140 Hb_000327_380 Hb_000327_380 Hb_010560_030--Hb_000327_380 Hb_000189_240 Hb_000189_240 Hb_010560_030--Hb_000189_240 Hb_000302_140 Hb_000302_140 Hb_010560_030--Hb_000302_140 Hb_002303_060 Hb_002303_060 Hb_010560_030--Hb_002303_060 Hb_000087_130 Hb_000087_130 Hb_010560_030--Hb_000087_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1266 11.015 28.3932 57.3642 7.95068 5.2702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.5607 63.167 14.5985 12.7257 6.89014

CAGE analysis