Hb_000365_250

Information

Type -
Description -
Location Contig365: 245129-245791
Sequence    

Annotation

kegg
ID rcu:RCOM_0126940
description hypothetical protein
nr
ID XP_002531822.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0Q3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0126940 PE=4 SV=1
Gene Ontology
ID GO:0009506
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000365_250 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000066_090 0.1141076315 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
3 Hb_012340_050 0.1180205238 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
4 Hb_000638_170 0.1237817894 - - PREDICTED: ras-related protein RABC1 [Jatropha curcas]
5 Hb_005144_010 0.1241392868 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
6 Hb_002105_100 0.125013891 - - protein with unknown function [Ricinus communis]
7 Hb_000107_300 0.1271583317 - - PREDICTED: AP-1 complex subunit sigma-2 [Jatropha curcas]
8 Hb_000329_110 0.1305707767 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
9 Hb_150196_010 0.1319723598 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
10 Hb_145880_020 0.1341469377 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
11 Hb_000002_380 0.1346111449 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
12 Hb_003376_190 0.1352577501 - - syntaxin, putative [Ricinus communis]
13 Hb_022318_010 0.1356434767 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000805_240 0.1359576609 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
15 Hb_004696_080 0.1361446328 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
16 Hb_154948_040 0.136183534 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
17 Hb_004157_040 0.136472136 - - Rab2 [Hevea brasiliensis]
18 Hb_000849_130 0.1369032009 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
19 Hb_000390_300 0.1370864643 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
20 Hb_003502_090 0.1384136119 - - ATP synthase subunit d, putative [Ricinus communis]

Gene co-expression network

sample Hb_000365_250 Hb_000365_250 Hb_000066_090 Hb_000066_090 Hb_000365_250--Hb_000066_090 Hb_012340_050 Hb_012340_050 Hb_000365_250--Hb_012340_050 Hb_000638_170 Hb_000638_170 Hb_000365_250--Hb_000638_170 Hb_005144_010 Hb_005144_010 Hb_000365_250--Hb_005144_010 Hb_002105_100 Hb_002105_100 Hb_000365_250--Hb_002105_100 Hb_000107_300 Hb_000107_300 Hb_000365_250--Hb_000107_300 Hb_000329_110 Hb_000329_110 Hb_000066_090--Hb_000329_110 Hb_000406_080 Hb_000406_080 Hb_000066_090--Hb_000406_080 Hb_000140_380 Hb_000140_380 Hb_000066_090--Hb_000140_380 Hb_007926_050 Hb_007926_050 Hb_000066_090--Hb_007926_050 Hb_000359_090 Hb_000359_090 Hb_000066_090--Hb_000359_090 Hb_012340_050--Hb_000107_300 Hb_012340_050--Hb_005144_010 Hb_000826_100 Hb_000826_100 Hb_012340_050--Hb_000826_100 Hb_002314_010 Hb_002314_010 Hb_012340_050--Hb_002314_010 Hb_006452_110 Hb_006452_110 Hb_012340_050--Hb_006452_110 Hb_009486_020 Hb_009486_020 Hb_000638_170--Hb_009486_020 Hb_002303_060 Hb_002303_060 Hb_000638_170--Hb_002303_060 Hb_000336_240 Hb_000336_240 Hb_000638_170--Hb_000336_240 Hb_114310_080 Hb_114310_080 Hb_000638_170--Hb_114310_080 Hb_000483_390 Hb_000483_390 Hb_000638_170--Hb_000483_390 Hb_000805_240 Hb_000805_240 Hb_000638_170--Hb_000805_240 Hb_005144_010--Hb_002314_010 Hb_005144_010--Hb_000107_300 Hb_045003_010 Hb_045003_010 Hb_005144_010--Hb_045003_010 Hb_145880_020 Hb_145880_020 Hb_005144_010--Hb_145880_020 Hb_000002_380 Hb_000002_380 Hb_002105_100--Hb_000002_380 Hb_154948_040 Hb_154948_040 Hb_002105_100--Hb_154948_040 Hb_000005_090 Hb_000005_090 Hb_002105_100--Hb_000005_090 Hb_002105_100--Hb_000805_240 Hb_000390_300 Hb_000390_300 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_000215_330 Hb_000215_330 Hb_000107_300--Hb_000215_330 Hb_000107_300--Hb_002314_010 Hb_003376_190 Hb_003376_190 Hb_000107_300--Hb_003376_190 Hb_000107_300--Hb_002303_060 Hb_005306_070 Hb_005306_070 Hb_000107_300--Hb_005306_070 Hb_000107_300--Hb_000826_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7667 8.66585 9.55761 43.8262 18.8813 11.1873
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.8151 45.7183 25.9219 14.7842 9.57195

CAGE analysis