Hb_000066_090

Information

Type -
Description -
Location Contig66: 132639-149997
Sequence    

Annotation

kegg
ID tcc:TCM_043508
description Pyruvate kinase family protein isoform 1
nr
ID XP_012090125.1
description PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
swissprot
ID Q42806
description Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1
trembl
ID A0A061FQL5
description Pyruvate kinase OS=Theobroma cacao GN=TCM_043508 PE=3 SV=1
Gene Ontology
ID GO:0000287
description pyruvate cytosolic isozyme-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52914: 132336-148529 , PASA_asmbl_52915: 137694-138087
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000066_090 0.0 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
2 Hb_000365_250 0.1141076315 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000329_110 0.1188682312 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
4 Hb_000406_080 0.1253924248 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
5 Hb_000140_380 0.1286680859 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
6 Hb_007926_050 0.1318797481 - - PREDICTED: probable CCR4-associated factor 1 homolog 11 [Jatropha curcas]
7 Hb_000359_090 0.1324552032 - - PREDICTED: persulfide dioxygenase ETHE1 homolog, mitochondrial-like [Malus domestica]
8 Hb_000125_080 0.1327910771 transcription factor TF Family: mTERF -
9 Hb_000430_020 0.1336918844 - - -
10 Hb_004627_030 0.1340608858 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
11 Hb_005074_030 0.1351827082 - - -
12 Hb_003567_030 0.1353545237 - - PREDICTED: nifU-like protein 4, mitochondrial [Jatropha curcas]
13 Hb_000212_450 0.1392354776 - - PREDICTED: basic leucine zipper and W2 domain-containing protein 2 [Jatropha curcas]
14 Hb_000384_070 0.1397749287 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000608_050 0.1402080337 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
16 Hb_002133_020 0.1422332549 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000849_130 0.1432048604 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
18 Hb_000805_240 0.1438701813 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
19 Hb_187679_010 0.144036126 - - -
20 Hb_000414_130 0.1452727323 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]

Gene co-expression network

sample Hb_000066_090 Hb_000066_090 Hb_000365_250 Hb_000365_250 Hb_000066_090--Hb_000365_250 Hb_000329_110 Hb_000329_110 Hb_000066_090--Hb_000329_110 Hb_000406_080 Hb_000406_080 Hb_000066_090--Hb_000406_080 Hb_000140_380 Hb_000140_380 Hb_000066_090--Hb_000140_380 Hb_007926_050 Hb_007926_050 Hb_000066_090--Hb_007926_050 Hb_000359_090 Hb_000359_090 Hb_000066_090--Hb_000359_090 Hb_012340_050 Hb_012340_050 Hb_000365_250--Hb_012340_050 Hb_000638_170 Hb_000638_170 Hb_000365_250--Hb_000638_170 Hb_005144_010 Hb_005144_010 Hb_000365_250--Hb_005144_010 Hb_002105_100 Hb_002105_100 Hb_000365_250--Hb_002105_100 Hb_000107_300 Hb_000107_300 Hb_000365_250--Hb_000107_300 Hb_000805_240 Hb_000805_240 Hb_000329_110--Hb_000805_240 Hb_004696_080 Hb_004696_080 Hb_000329_110--Hb_004696_080 Hb_000329_110--Hb_000406_080 Hb_000645_090 Hb_000645_090 Hb_000329_110--Hb_000645_090 Hb_000030_030 Hb_000030_030 Hb_000329_110--Hb_000030_030 Hb_089032_030 Hb_089032_030 Hb_000329_110--Hb_089032_030 Hb_000417_040 Hb_000417_040 Hb_000406_080--Hb_000417_040 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000406_080--Hb_000645_090 Hb_181385_010 Hb_181385_010 Hb_000406_080--Hb_181385_010 Hb_000252_100 Hb_000252_100 Hb_000140_380--Hb_000252_100 Hb_004078_040 Hb_004078_040 Hb_000140_380--Hb_004078_040 Hb_000787_020 Hb_000787_020 Hb_000140_380--Hb_000787_020 Hb_000173_410 Hb_000173_410 Hb_000140_380--Hb_000173_410 Hb_000890_150 Hb_000890_150 Hb_000140_380--Hb_000890_150 Hb_000454_090 Hb_000454_090 Hb_000140_380--Hb_000454_090 Hb_001189_040 Hb_001189_040 Hb_007926_050--Hb_001189_040 Hb_000953_130 Hb_000953_130 Hb_007926_050--Hb_000953_130 Hb_000384_070 Hb_000384_070 Hb_007926_050--Hb_000384_070 Hb_002133_020 Hb_002133_020 Hb_007926_050--Hb_002133_020 Hb_002045_070 Hb_002045_070 Hb_007926_050--Hb_002045_070 Hb_033594_080 Hb_033594_080 Hb_007926_050--Hb_033594_080 Hb_000429_050 Hb_000429_050 Hb_000359_090--Hb_000429_050 Hb_000258_240 Hb_000258_240 Hb_000359_090--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000359_090--Hb_002781_030 Hb_000359_090--Hb_000384_070 Hb_000359_090--Hb_002133_020 Hb_004032_030 Hb_004032_030 Hb_000359_090--Hb_004032_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.46946 7.35109 3.72606 23.4188 6.80535 5.07028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3576 14.6145 13.1406 7.06301 3.19782

CAGE analysis