Hb_181385_010

Information

Type -
Description -
Location Contig181385: 647-1880
Sequence    

Annotation

kegg
ID pop:POPTR_0009s02970g
description POPTRDRAFT_650339; hypothetical protein
nr
ID XP_012092587.1
description PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067J9E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05255 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17638: 1282-1445
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181385_010 0.0 - - PREDICTED: uncharacterized protein LOC105650319 [Jatropha curcas]
2 Hb_000406_080 0.0851787263 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
3 Hb_000125_080 0.102360759 transcription factor TF Family: mTERF -
4 Hb_004473_040 0.1155198347 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002983_050 0.1171039894 - - PREDICTED: acetylornithine aminotransferase, mitochondrial [Jatropha curcas]
6 Hb_000417_040 0.1189806214 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
7 Hb_001057_040 0.1202384822 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
8 Hb_005914_080 0.1234535753 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
9 Hb_004705_100 0.1247675234 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]
10 Hb_001287_080 0.1247981007 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003414_050 0.1248219358 - - PREDICTED: uncharacterized protein LOC105640180 isoform X3 [Jatropha curcas]
12 Hb_003108_020 0.1264081226 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
13 Hb_005784_040 0.1297020696 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
14 Hb_144528_010 0.1313182493 - - type II inositol 5-phosphatase, putative [Ricinus communis]
15 Hb_005143_040 0.1328395479 - - hypothetical protein JCGZ_17315 [Jatropha curcas]
16 Hb_002260_150 0.1329040929 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
17 Hb_000329_110 0.1330442294 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
18 Hb_020581_010 0.1330885471 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000670_050 0.1331297022 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
20 Hb_001215_040 0.1336218677 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_181385_010 Hb_181385_010 Hb_000406_080 Hb_000406_080 Hb_181385_010--Hb_000406_080 Hb_000125_080 Hb_000125_080 Hb_181385_010--Hb_000125_080 Hb_004473_040 Hb_004473_040 Hb_181385_010--Hb_004473_040 Hb_002983_050 Hb_002983_050 Hb_181385_010--Hb_002983_050 Hb_000417_040 Hb_000417_040 Hb_181385_010--Hb_000417_040 Hb_001057_040 Hb_001057_040 Hb_181385_010--Hb_001057_040 Hb_000406_080--Hb_000417_040 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_000406_080--Hb_001057_040 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_092337_010 Hb_092337_010 Hb_000125_080--Hb_092337_010 Hb_003108_020 Hb_003108_020 Hb_000125_080--Hb_003108_020 Hb_000125_080--Hb_000406_080 Hb_000125_080--Hb_004473_040 Hb_004705_100 Hb_004705_100 Hb_000125_080--Hb_004705_100 Hb_000025_180 Hb_000025_180 Hb_004473_040--Hb_000025_180 Hb_004473_040--Hb_003108_020 Hb_001922_050 Hb_001922_050 Hb_004473_040--Hb_001922_050 Hb_004473_040--Hb_000406_080 Hb_004473_040--Hb_000417_040 Hb_000329_340 Hb_000329_340 Hb_002983_050--Hb_000329_340 Hb_002983_050--Hb_000645_090 Hb_000106_140 Hb_000106_140 Hb_002983_050--Hb_000106_140 Hb_000023_090 Hb_000023_090 Hb_002983_050--Hb_000023_090 Hb_148113_010 Hb_148113_010 Hb_002983_050--Hb_148113_010 Hb_002983_050--Hb_000406_080 Hb_003389_040 Hb_003389_040 Hb_000417_040--Hb_003389_040 Hb_005846_040 Hb_005846_040 Hb_000417_040--Hb_005846_040 Hb_000032_380 Hb_000032_380 Hb_000417_040--Hb_000032_380 Hb_007101_300 Hb_007101_300 Hb_000417_040--Hb_007101_300 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270 Hb_000701_100 Hb_000701_100 Hb_001057_040--Hb_000701_100 Hb_009051_030 Hb_009051_030 Hb_001057_040--Hb_009051_030 Hb_009615_070 Hb_009615_070 Hb_001057_040--Hb_009615_070 Hb_018124_010 Hb_018124_010 Hb_001057_040--Hb_018124_010 Hb_008695_050 Hb_008695_050 Hb_001057_040--Hb_008695_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57894 2.05968 0.479879 4.80411 2.16422 2.98701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45509 5.47762 2.37133 2.13685 1.4051

CAGE analysis