Hb_001922_050

Information

Type -
Description -
Location Contig1922: 51925-54240
Sequence    

Annotation

kegg
ID rcu:RCOM_1581530
description hypothetical protein
nr
ID XP_012090158.1
description PREDICTED: F-box protein At5g52880 [Jatropha curcas]
swissprot
ID Q9FLX3
description F-box protein At5g52880 OS=Arabidopsis thaliana GN=At5g52880 PE=2 SV=1
trembl
ID A0A067JQE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26031 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19158: 53598-54035 , PASA_asmbl_19159: 55121-61545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001922_050 0.0 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
2 Hb_004473_040 0.0984485858 - - conserved hypothetical protein [Ricinus communis]
3 Hb_155159_020 0.1172938898 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
4 Hb_003693_070 0.1190186148 - - PREDICTED: S-(hydroxymethyl)glutathione dehydrogenase [Jatropha curcas]
5 Hb_000025_180 0.1202892957 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
6 Hb_028285_010 0.1207947468 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
7 Hb_000025_630 0.1216674375 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
8 Hb_006588_200 0.1227579309 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
9 Hb_001215_040 0.1228497619 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000329_110 0.1246800604 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
11 Hb_000905_060 0.1247400084 - - protein with unknown function [Ricinus communis]
12 Hb_000062_070 0.1254251191 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
13 Hb_000120_060 0.1259272902 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
14 Hb_001427_160 0.1272510992 - - o-methyltransferase, putative [Ricinus communis]
15 Hb_002391_270 0.1280462735 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
16 Hb_006913_010 0.1282309131 - - PREDICTED: uncharacterized protein LOC105649144 [Jatropha curcas]
17 Hb_000603_150 0.1284493559 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
18 Hb_006698_040 0.1294506912 - - bHLH1 transcription factor [Hevea brasiliensis]
19 Hb_074715_010 0.1296203542 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
20 Hb_034552_030 0.1302637668 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001922_050 Hb_001922_050 Hb_004473_040 Hb_004473_040 Hb_001922_050--Hb_004473_040 Hb_155159_020 Hb_155159_020 Hb_001922_050--Hb_155159_020 Hb_003693_070 Hb_003693_070 Hb_001922_050--Hb_003693_070 Hb_000025_180 Hb_000025_180 Hb_001922_050--Hb_000025_180 Hb_028285_010 Hb_028285_010 Hb_001922_050--Hb_028285_010 Hb_000025_630 Hb_000025_630 Hb_001922_050--Hb_000025_630 Hb_004473_040--Hb_000025_180 Hb_003108_020 Hb_003108_020 Hb_004473_040--Hb_003108_020 Hb_000125_080 Hb_000125_080 Hb_004473_040--Hb_000125_080 Hb_000406_080 Hb_000406_080 Hb_004473_040--Hb_000406_080 Hb_000417_040 Hb_000417_040 Hb_004473_040--Hb_000417_040 Hb_001159_130 Hb_001159_130 Hb_155159_020--Hb_001159_130 Hb_022115_020 Hb_022115_020 Hb_155159_020--Hb_022115_020 Hb_084646_010 Hb_084646_010 Hb_155159_020--Hb_084646_010 Hb_000116_270 Hb_000116_270 Hb_155159_020--Hb_000116_270 Hb_000603_150 Hb_000603_150 Hb_155159_020--Hb_000603_150 Hb_000787_020 Hb_000787_020 Hb_155159_020--Hb_000787_020 Hb_000120_060 Hb_000120_060 Hb_003693_070--Hb_000120_060 Hb_010142_030 Hb_010142_030 Hb_003693_070--Hb_010142_030 Hb_000808_280 Hb_000808_280 Hb_003693_070--Hb_000808_280 Hb_004046_050 Hb_004046_050 Hb_003693_070--Hb_004046_050 Hb_000205_300 Hb_000205_300 Hb_003693_070--Hb_000205_300 Hb_000019_030 Hb_000019_030 Hb_003693_070--Hb_000019_030 Hb_000260_330 Hb_000260_330 Hb_000025_180--Hb_000260_330 Hb_172632_120 Hb_172632_120 Hb_000025_180--Hb_172632_120 Hb_003750_050 Hb_003750_050 Hb_000025_180--Hb_003750_050 Hb_013738_020 Hb_013738_020 Hb_000025_180--Hb_013738_020 Hb_000025_180--Hb_000603_150 Hb_002811_180 Hb_002811_180 Hb_000025_180--Hb_002811_180 Hb_000062_070 Hb_000062_070 Hb_028285_010--Hb_000062_070 Hb_005048_130 Hb_005048_130 Hb_028285_010--Hb_005048_130 Hb_000907_110 Hb_000907_110 Hb_028285_010--Hb_000907_110 Hb_003761_010 Hb_003761_010 Hb_028285_010--Hb_003761_010 Hb_001408_040 Hb_001408_040 Hb_028285_010--Hb_001408_040 Hb_014497_050 Hb_014497_050 Hb_028285_010--Hb_014497_050 Hb_000025_630--Hb_172632_120 Hb_012322_020 Hb_012322_020 Hb_000025_630--Hb_012322_020 Hb_000025_630--Hb_000025_180 Hb_002235_210 Hb_002235_210 Hb_000025_630--Hb_002235_210 Hb_001699_100 Hb_001699_100 Hb_000025_630--Hb_001699_100 Hb_007441_190 Hb_007441_190 Hb_000025_630--Hb_007441_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.71897 1.70929 1.4459 4.23559 2.60645 1.69355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.95566 3.11323 2.36334 3.0907 0.508296

CAGE analysis