Hb_004473_040

Information

Type -
Description -
Location Contig4473: 100171-106676
Sequence    

Annotation

kegg
ID rcu:RCOM_1585610
description hypothetical protein
nr
ID XP_002510039.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M2Y6
description Uncharacterized protein At3g49720 OS=Arabidopsis thaliana GN=At3g49720 PE=2 SV=1
trembl
ID B9R6U6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1585610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43089: 100185-103162 , PASA_asmbl_43090: 104083-104895
cDNA
(Sanger)
(ID:Location)		 039_B14.ab1: 100226-103133

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004473_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000025_180 0.0916957883 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
3 Hb_003108_020 0.0935667807 - - PREDICTED: transmembrane protein 18 [Jatropha curcas]
4 Hb_000125_080 0.0965587508 transcription factor TF Family: mTERF -
5 Hb_001922_050 0.0984485858 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
6 Hb_000406_080 0.1006482767 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
7 Hb_000417_040 0.1051330766 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
8 Hb_000670_050 0.1051990606 transcription factor TF Family: MYB hypothetical protein JCGZ_16088 [Jatropha curcas]
9 Hb_000025_630 0.1053460931 - - PREDICTED: uncharacterized protein LOC105635952 [Jatropha curcas]
10 Hb_000002_380 0.1062382591 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
11 Hb_000610_050 0.1092157635 - - skp1, putative [Ricinus communis]
12 Hb_001090_040 0.1094180859 - - Transmembrane protein 50A, putative [Ricinus communis]
13 Hb_007441_190 0.1112815487 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
14 Hb_001287_080 0.1115672728 - - conserved hypothetical protein [Ricinus communis]
15 Hb_158062_010 0.1118231075 - - PREDICTED: uncharacterized protein LOC105634413 [Jatropha curcas]
16 Hb_004310_020 0.1124473263 - - PREDICTED: COP9 signalosome complex subunit 7 isoform X1 [Jatropha curcas]
17 Hb_000120_670 0.1134110345 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
18 Hb_022318_010 0.113874777 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000146_050 0.1141161537 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
20 Hb_010712_030 0.1144264798 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004473_040 Hb_004473_040 Hb_000025_180 Hb_000025_180 Hb_004473_040--Hb_000025_180 Hb_003108_020 Hb_003108_020 Hb_004473_040--Hb_003108_020 Hb_000125_080 Hb_000125_080 Hb_004473_040--Hb_000125_080 Hb_001922_050 Hb_001922_050 Hb_004473_040--Hb_001922_050 Hb_000406_080 Hb_000406_080 Hb_004473_040--Hb_000406_080 Hb_000417_040 Hb_000417_040 Hb_004473_040--Hb_000417_040 Hb_000260_330 Hb_000260_330 Hb_000025_180--Hb_000260_330 Hb_172632_120 Hb_172632_120 Hb_000025_180--Hb_172632_120 Hb_003750_050 Hb_003750_050 Hb_000025_180--Hb_003750_050 Hb_013738_020 Hb_013738_020 Hb_000025_180--Hb_013738_020 Hb_000603_150 Hb_000603_150 Hb_000025_180--Hb_000603_150 Hb_002811_180 Hb_002811_180 Hb_000025_180--Hb_002811_180 Hb_000002_380 Hb_000002_380 Hb_003108_020--Hb_000002_380 Hb_003502_090 Hb_003502_090 Hb_003108_020--Hb_003502_090 Hb_002182_080 Hb_002182_080 Hb_003108_020--Hb_002182_080 Hb_000479_190 Hb_000479_190 Hb_003108_020--Hb_000479_190 Hb_000656_170 Hb_000656_170 Hb_003108_020--Hb_000656_170 Hb_004032_010 Hb_004032_010 Hb_003108_020--Hb_004032_010 Hb_092337_010 Hb_092337_010 Hb_000125_080--Hb_092337_010 Hb_000125_080--Hb_003108_020 Hb_000125_080--Hb_000406_080 Hb_004705_100 Hb_004705_100 Hb_000125_080--Hb_004705_100 Hb_181385_010 Hb_181385_010 Hb_000125_080--Hb_181385_010 Hb_155159_020 Hb_155159_020 Hb_001922_050--Hb_155159_020 Hb_003693_070 Hb_003693_070 Hb_001922_050--Hb_003693_070 Hb_001922_050--Hb_000025_180 Hb_028285_010 Hb_028285_010 Hb_001922_050--Hb_028285_010 Hb_000025_630 Hb_000025_630 Hb_001922_050--Hb_000025_630 Hb_000406_080--Hb_000417_040 Hb_000329_110 Hb_000329_110 Hb_000406_080--Hb_000329_110 Hb_001225_080 Hb_001225_080 Hb_000406_080--Hb_001225_080 Hb_001057_040 Hb_001057_040 Hb_000406_080--Hb_001057_040 Hb_000645_090 Hb_000645_090 Hb_000406_080--Hb_000645_090 Hb_000406_080--Hb_181385_010 Hb_003389_040 Hb_003389_040 Hb_000417_040--Hb_003389_040 Hb_005846_040 Hb_005846_040 Hb_000417_040--Hb_005846_040 Hb_000032_380 Hb_000032_380 Hb_000417_040--Hb_000032_380 Hb_007101_300 Hb_007101_300 Hb_000417_040--Hb_007101_300 Hb_000032_270 Hb_000032_270 Hb_000417_040--Hb_000032_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.91332 2.78171 2.00769 7.2116 5.18824 4.71228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90387 7.02756 4.08938 4.09236 1.32521

CAGE analysis