Hb_000776_060

Information

Type -
Description -
Location Contig776: 80094-80405
Sequence    

Annotation

kegg
ID ppp:PHYPADRAFT_152862
description HFO1503; histone H4
nr
ID ACG30677.1
description histone H4 [Zea mays]
swissprot
ID P0CG89
description Histone H4 OS=Glycine max PE=3 SV=1
trembl
ID Q5NSW2
description Histone H4 (Fragment) OS=Fragaria ananassa PE=2 SV=1
Gene Ontology
ID GO:0000786
description histone h4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000776_060 0.0 - - histone H4 [Zea mays]
2 Hb_000796_020 0.121491399 - - ADP-ribosylation factor [Phaseolus vulgaris]
3 Hb_000062_090 0.1357744299 - - PREDICTED: uncharacterized protein LOC105644743 isoform X2 [Jatropha curcas]
4 Hb_030992_010 0.1420676177 - - acetylornithine aminotransferase, putative [Ricinus communis]
5 Hb_012760_050 0.1453449982 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
6 Hb_001195_410 0.1482983532 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
7 Hb_006711_090 0.1552039112 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
8 Hb_048476_060 0.1566835991 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
9 Hb_004453_070 0.1584714481 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
10 Hb_000683_100 0.159501064 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
11 Hb_012362_030 0.1722753755 - - PREDICTED: GPI-anchored protein LORELEI-like [Populus euphratica]
12 Hb_000008_190 0.1756185131 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
13 Hb_002217_500 0.1764890322 - - hypothetical protein JCGZ_19014 [Jatropha curcas]
14 Hb_002235_060 0.1783387942 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
15 Hb_000023_310 0.1785521607 - - PREDICTED: probable folate-biopterin transporter 2 [Populus euphratica]
16 Hb_001584_240 0.1803208795 - - ADP-ribosylation factor [Gossypium barbadense]
17 Hb_000645_200 0.1806177155 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
18 Hb_002450_030 0.1812475616 - - ATPP2-A13, putative [Ricinus communis]
19 Hb_000177_110 0.1819987024 - - PREDICTED: uncharacterized protein LOC105642063 [Jatropha curcas]
20 Hb_013394_050 0.1833639544 - - PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000776_060 Hb_000776_060 Hb_000796_020 Hb_000796_020 Hb_000776_060--Hb_000796_020 Hb_000062_090 Hb_000062_090 Hb_000776_060--Hb_000062_090 Hb_030992_010 Hb_030992_010 Hb_000776_060--Hb_030992_010 Hb_012760_050 Hb_012760_050 Hb_000776_060--Hb_012760_050 Hb_001195_410 Hb_001195_410 Hb_000776_060--Hb_001195_410 Hb_006711_090 Hb_006711_090 Hb_000776_060--Hb_006711_090 Hb_000683_100 Hb_000683_100 Hb_000796_020--Hb_000683_100 Hb_000796_020--Hb_030992_010 Hb_122636_010 Hb_122636_010 Hb_000796_020--Hb_122636_010 Hb_004453_070 Hb_004453_070 Hb_000796_020--Hb_004453_070 Hb_000796_020--Hb_000062_090 Hb_000402_130 Hb_000402_130 Hb_000062_090--Hb_000402_130 Hb_048476_060 Hb_048476_060 Hb_000062_090--Hb_048476_060 Hb_000062_090--Hb_006711_090 Hb_004158_020 Hb_004158_020 Hb_000062_090--Hb_004158_020 Hb_000671_130 Hb_000671_130 Hb_000062_090--Hb_000671_130 Hb_012362_030 Hb_012362_030 Hb_000062_090--Hb_012362_030 Hb_030992_010--Hb_122636_010 Hb_030992_010--Hb_000062_090 Hb_000008_190 Hb_000008_190 Hb_030992_010--Hb_000008_190 Hb_000177_110 Hb_000177_110 Hb_030992_010--Hb_000177_110 Hb_013394_050 Hb_013394_050 Hb_012760_050--Hb_013394_050 Hb_019181_030 Hb_019181_030 Hb_012760_050--Hb_019181_030 Hb_012760_050--Hb_048476_060 Hb_012760_050--Hb_000062_090 Hb_012760_050--Hb_001195_410 Hb_002217_500 Hb_002217_500 Hb_012760_050--Hb_002217_500 Hb_118507_010 Hb_118507_010 Hb_001195_410--Hb_118507_010 Hb_001195_410--Hb_000008_190 Hb_001195_410--Hb_004453_070 Hb_000172_510 Hb_000172_510 Hb_001195_410--Hb_000172_510 Hb_002007_320 Hb_002007_320 Hb_006711_090--Hb_002007_320 Hb_000935_040 Hb_000935_040 Hb_006711_090--Hb_000935_040 Hb_001904_050 Hb_001904_050 Hb_006711_090--Hb_001904_050 Hb_006711_090--Hb_004158_020 Hb_188281_030 Hb_188281_030 Hb_006711_090--Hb_188281_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49837 14.3206 27.0344 68.8604 1.3943 9.23549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9298 20.8572 13.1887 10.9654 9.28556

CAGE analysis