Hb_000483_400

Information

Type -
Description -
Location Contig483: 345657-346016
Sequence    

Annotation

kegg
ID tcc:TCM_036287
description LYR family of Fe/S cluster biogenesis protein isoform 1
nr
ID XP_012093004.1
description PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
swissprot
ID B0K036
description Succinate dehydrogenase assembly factor 1, mitochondrial OS=Rattus norvegicus GN=Sdhaf1 PE=3 SV=1
trembl
ID A0A067JKW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05888 PE=4 SV=1
Gene Ontology
ID GO:0005622
description succinate dehydrogenase assembly factor 1 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44841: 346194-346541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000483_400 0.0 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
2 Hb_000796_020 0.1527682499 - - ADP-ribosylation factor [Phaseolus vulgaris]
3 Hb_000240_120 0.1632882202 - - ras-related protein Rab-5B [Reticulomyxa filosa]
4 Hb_175933_010 0.1723909635 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
5 Hb_004453_070 0.1824914854 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
6 Hb_000683_100 0.183194112 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
7 Hb_000217_020 0.1872092892 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
8 Hb_002960_130 0.1872951044 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
9 Hb_001208_040 0.1878689491 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
10 Hb_001584_240 0.189528369 - - ADP-ribosylation factor [Gossypium barbadense]
11 Hb_000776_060 0.1949542776 - - histone H4 [Zea mays]
12 Hb_030992_010 0.1963954436 - - acetylornithine aminotransferase, putative [Ricinus communis]
13 Hb_001597_050 0.1998072312 - - -
14 Hb_128473_010 0.2006361045 - - -
15 Hb_032972_010 0.2010094853 - - Glycolipid transfer protein, putative [Ricinus communis]
16 Hb_006452_110 0.2024148836 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
17 Hb_001195_410 0.202662075 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
18 Hb_000028_260 0.2031463069 - - hypothetical protein glysoja_041948 [Glycine soja]
19 Hb_001247_030 0.2045683854 - - -
20 Hb_001969_020 0.2064999467 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]

Gene co-expression network

sample Hb_000483_400 Hb_000483_400 Hb_000796_020 Hb_000796_020 Hb_000483_400--Hb_000796_020 Hb_000240_120 Hb_000240_120 Hb_000483_400--Hb_000240_120 Hb_175933_010 Hb_175933_010 Hb_000483_400--Hb_175933_010 Hb_004453_070 Hb_004453_070 Hb_000483_400--Hb_004453_070 Hb_000683_100 Hb_000683_100 Hb_000483_400--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_000483_400--Hb_000217_020 Hb_000796_020--Hb_000683_100 Hb_000776_060 Hb_000776_060 Hb_000796_020--Hb_000776_060 Hb_030992_010 Hb_030992_010 Hb_000796_020--Hb_030992_010 Hb_122636_010 Hb_122636_010 Hb_000796_020--Hb_122636_010 Hb_000796_020--Hb_004453_070 Hb_000062_090 Hb_000062_090 Hb_000796_020--Hb_000062_090 Hb_011512_050 Hb_011512_050 Hb_000240_120--Hb_011512_050 Hb_000240_120--Hb_175933_010 Hb_001163_040 Hb_001163_040 Hb_000240_120--Hb_001163_040 Hb_132180_010 Hb_132180_010 Hb_000240_120--Hb_132180_010 Hb_001233_020 Hb_001233_020 Hb_000240_120--Hb_001233_020 Hb_001208_030 Hb_001208_030 Hb_000240_120--Hb_001208_030 Hb_175933_010--Hb_001208_030 Hb_008206_100 Hb_008206_100 Hb_175933_010--Hb_008206_100 Hb_032972_010 Hb_032972_010 Hb_175933_010--Hb_032972_010 Hb_001208_040 Hb_001208_040 Hb_175933_010--Hb_001208_040 Hb_001969_020 Hb_001969_020 Hb_175933_010--Hb_001969_020 Hb_001195_410 Hb_001195_410 Hb_004453_070--Hb_001195_410 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_004453_070--Hb_000062_090 Hb_000683_100--Hb_001969_020 Hb_002960_130 Hb_002960_130 Hb_000683_100--Hb_002960_130 Hb_148130_020 Hb_148130_020 Hb_000683_100--Hb_148130_020 Hb_010577_010 Hb_010577_010 Hb_000683_100--Hb_010577_010 Hb_091349_010 Hb_091349_010 Hb_000683_100--Hb_091349_010 Hb_000392_340 Hb_000392_340 Hb_000217_020--Hb_000392_340 Hb_019181_030 Hb_019181_030 Hb_000217_020--Hb_019181_030 Hb_001951_130 Hb_001951_130 Hb_000217_020--Hb_001951_130 Hb_000217_020--Hb_002960_130 Hb_004032_030 Hb_004032_030 Hb_000217_020--Hb_004032_030 Hb_000217_020--Hb_001208_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.17024 1.00142 2.5438 16.2587 0.720082 1.4443
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.95446 5.99717 2.98587 1.19041 0.653675

CAGE analysis