Hb_123301_010

Information

Type -
Description -
Location Contig123301: 452-658
Sequence    

Annotation

kegg
ID rcu:RCOM_1523340
description hypothetical protein
nr
ID XP_002513166.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RHE7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1523340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07097: 482-892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123301_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000649_340 0.1655325918 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
3 Hb_002686_260 0.1867681003 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
4 Hb_003226_130 0.1943606913 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
5 Hb_002490_030 0.1951075345 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000313_280 0.1978967838 - - hypothetical protein PRUPE_ppa014856mg, partial [Prunus persica]
7 Hb_126711_010 0.1997982052 - - JAZ10 [Hevea brasiliensis]
8 Hb_007163_050 0.2006845738 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
9 Hb_000413_080 0.2021312052 - - -
10 Hb_128473_010 0.2102988039 - - -
11 Hb_000163_040 0.2157402124 - - PREDICTED: indole-3-acetic acid-induced protein ARG2-like [Jatropha curcas]
12 Hb_011918_010 0.2168348999 - - hypothetical protein glysoja_041948 [Glycine soja]
13 Hb_003875_010 0.218339595 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
14 Hb_000028_260 0.2211778014 - - hypothetical protein glysoja_041948 [Glycine soja]
15 Hb_004117_330 0.2227406353 - - conserved hypothetical protein [Ricinus communis]
16 Hb_124951_020 0.2228381372 - - -
17 Hb_186647_010 0.2233702027 - - -
18 Hb_000816_190 0.2243368959 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004125_070 0.2274296755 - - Glycolipid transfer protein, putative [Ricinus communis]
20 Hb_000563_140 0.2290570587 - - PREDICTED: probable polygalacturonase [Jatropha curcas]

Gene co-expression network

sample Hb_123301_010 Hb_123301_010 Hb_000649_340 Hb_000649_340 Hb_123301_010--Hb_000649_340 Hb_002686_260 Hb_002686_260 Hb_123301_010--Hb_002686_260 Hb_003226_130 Hb_003226_130 Hb_123301_010--Hb_003226_130 Hb_002490_030 Hb_002490_030 Hb_123301_010--Hb_002490_030 Hb_000313_280 Hb_000313_280 Hb_123301_010--Hb_000313_280 Hb_126711_010 Hb_126711_010 Hb_123301_010--Hb_126711_010 Hb_128473_010 Hb_128473_010 Hb_000649_340--Hb_128473_010 Hb_000776_060 Hb_000776_060 Hb_000649_340--Hb_000776_060 Hb_001195_410 Hb_001195_410 Hb_000649_340--Hb_001195_410 Hb_000028_260 Hb_000028_260 Hb_000649_340--Hb_000028_260 Hb_000046_270 Hb_000046_270 Hb_000649_340--Hb_000046_270 Hb_005332_040 Hb_005332_040 Hb_002686_260--Hb_005332_040 Hb_001922_030 Hb_001922_030 Hb_002686_260--Hb_001922_030 Hb_002097_140 Hb_002097_140 Hb_002686_260--Hb_002097_140 Hb_014720_100 Hb_014720_100 Hb_002686_260--Hb_014720_100 Hb_005408_070 Hb_005408_070 Hb_002686_260--Hb_005408_070 Hb_007382_130 Hb_007382_130 Hb_003226_130--Hb_007382_130 Hb_005227_050 Hb_005227_050 Hb_003226_130--Hb_005227_050 Hb_003226_130--Hb_000313_280 Hb_001810_040 Hb_001810_040 Hb_003226_130--Hb_001810_040 Hb_001097_080 Hb_001097_080 Hb_003226_130--Hb_001097_080 Hb_002272_200 Hb_002272_200 Hb_002490_030--Hb_002272_200 Hb_002900_100 Hb_002900_100 Hb_002490_030--Hb_002900_100 Hb_124951_020 Hb_124951_020 Hb_002490_030--Hb_124951_020 Hb_000816_190 Hb_000816_190 Hb_002490_030--Hb_000816_190 Hb_001366_170 Hb_001366_170 Hb_002490_030--Hb_001366_170 Hb_066514_010 Hb_066514_010 Hb_002490_030--Hb_066514_010 Hb_002894_070 Hb_002894_070 Hb_000313_280--Hb_002894_070 Hb_002122_060 Hb_002122_060 Hb_000313_280--Hb_002122_060 Hb_000015_140 Hb_000015_140 Hb_000313_280--Hb_000015_140 Hb_000616_100 Hb_000616_100 Hb_000313_280--Hb_000616_100 Hb_000450_170 Hb_000450_170 Hb_000313_280--Hb_000450_170 Hb_001329_030 Hb_001329_030 Hb_126711_010--Hb_001329_030 Hb_001369_500 Hb_001369_500 Hb_126711_010--Hb_001369_500 Hb_000062_200 Hb_000062_200 Hb_126711_010--Hb_000062_200 Hb_126711_010--Hb_000313_280 Hb_126711_010--Hb_000649_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.6594 221.605 376.918 1495.63 5.43313 37.6587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
146.957 194.502 51.6022 151.549 11.6348

CAGE analysis