Hb_005332_040

Information

Type -
Description -
Location Contig5332: 57723-58151
Sequence    

Annotation

kegg
ID rcu:RCOM_0530890
description hypothetical protein
nr
ID XP_002526938.1
description hypothetical protein RCOM_0530890 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLR9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0530890 PE=4 SV=1
Gene Ontology
ID GO:0044424
description hop-interacting protein thi031

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005332_040 0.0 - - hypothetical protein RCOM_0530890 [Ricinus communis]
2 Hb_029977_020 0.1413851329 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
3 Hb_002686_260 0.1622963379 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
4 Hb_000754_070 0.1623431662 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001148_100 0.1639953745 - - -
6 Hb_002200_070 0.1747008794 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
7 Hb_005408_070 0.177028152 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP4 [Jatropha curcas]
8 Hb_000011_310 0.1812514625 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
9 Hb_000175_470 0.1860263107 - - lactoylglutathione lyase, putative [Ricinus communis]
10 Hb_000216_050 0.189483568 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
11 Hb_002627_020 0.1898684726 - - PREDICTED: TBC1 domain family member 2B [Jatropha curcas]
12 Hb_014508_010 0.1902795309 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
13 Hb_031089_020 0.1914617121 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
14 Hb_000206_230 0.192189376 - - conserved hypothetical protein [Ricinus communis]
15 Hb_147245_010 0.1934289906 - - casein kinase, putative [Ricinus communis]
16 Hb_003371_070 0.1937889273 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
17 Hb_000920_160 0.1945215612 - - annexin [Manihot esculenta]
18 Hb_061222_010 0.1951616688 - - hypothetical protein RCOM_0012650 [Ricinus communis]
19 Hb_001369_630 0.1958787159 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
20 Hb_002235_060 0.1978547695 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_005332_040 Hb_005332_040 Hb_029977_020 Hb_029977_020 Hb_005332_040--Hb_029977_020 Hb_002686_260 Hb_002686_260 Hb_005332_040--Hb_002686_260 Hb_000754_070 Hb_000754_070 Hb_005332_040--Hb_000754_070 Hb_001148_100 Hb_001148_100 Hb_005332_040--Hb_001148_100 Hb_002200_070 Hb_002200_070 Hb_005332_040--Hb_002200_070 Hb_005408_070 Hb_005408_070 Hb_005332_040--Hb_005408_070 Hb_000206_230 Hb_000206_230 Hb_029977_020--Hb_000206_230 Hb_014508_010 Hb_014508_010 Hb_029977_020--Hb_014508_010 Hb_010672_050 Hb_010672_050 Hb_029977_020--Hb_010672_050 Hb_004052_100 Hb_004052_100 Hb_029977_020--Hb_004052_100 Hb_003299_020 Hb_003299_020 Hb_029977_020--Hb_003299_020 Hb_001922_030 Hb_001922_030 Hb_002686_260--Hb_001922_030 Hb_002097_140 Hb_002097_140 Hb_002686_260--Hb_002097_140 Hb_014720_100 Hb_014720_100 Hb_002686_260--Hb_014720_100 Hb_002686_260--Hb_005408_070 Hb_123301_010 Hb_123301_010 Hb_002686_260--Hb_123301_010 Hb_000754_070--Hb_002686_260 Hb_000754_070--Hb_001148_100 Hb_000086_290 Hb_000086_290 Hb_000754_070--Hb_000086_290 Hb_000027_210 Hb_000027_210 Hb_000754_070--Hb_000027_210 Hb_032972_010 Hb_032972_010 Hb_000754_070--Hb_032972_010 Hb_002781_050 Hb_002781_050 Hb_001148_100--Hb_002781_050 Hb_000696_070 Hb_000696_070 Hb_001148_100--Hb_000696_070 Hb_000175_470 Hb_000175_470 Hb_001148_100--Hb_000175_470 Hb_002151_060 Hb_002151_060 Hb_001148_100--Hb_002151_060 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_090 Hb_001148_090 Hb_001148_100--Hb_001148_090 Hb_001621_100 Hb_001621_100 Hb_002200_070--Hb_001621_100 Hb_000861_100 Hb_000861_100 Hb_002200_070--Hb_000861_100 Hb_031089_020 Hb_031089_020 Hb_002200_070--Hb_031089_020 Hb_003371_070 Hb_003371_070 Hb_002200_070--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_002200_070--Hb_000057_130 Hb_003470_110 Hb_003470_110 Hb_002200_070--Hb_003470_110 Hb_002539_040 Hb_002539_040 Hb_005408_070--Hb_002539_040 Hb_000567_180 Hb_000567_180 Hb_005408_070--Hb_000567_180 Hb_005408_070--Hb_000175_470 Hb_001054_090 Hb_001054_090 Hb_005408_070--Hb_001054_090 Hb_000645_200 Hb_000645_200 Hb_005408_070--Hb_000645_200 Hb_005813_010 Hb_005813_010 Hb_005408_070--Hb_005813_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.074054 4.21608 12.0508 26.6176 0.219509 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.42011 5.9052 2.24334 8.4304 5.18261

CAGE analysis