Hb_000027_210

Information

Type -
Description -
Location Contig27: 315397-319345
Sequence    

Annotation

kegg
ID osa:4327944
description Os01g0689300
nr
ID NP_001043922.2
description Os01g0689300, partial [Oryza sativa Japonica Group]
swissprot
ID Q96PM5
description RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1
trembl
ID Q0JK92
description Os01g0689300 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os01g0689300 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28145: 316795-317165
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000027_210 0.0 - - Os01g0689300, partial [Oryza sativa Japonica Group]
2 Hb_002781_050 0.1317709272 - - cytochrome B5 isoform 1, putative [Ricinus communis]
3 Hb_001148_090 0.1559077134 - - hypothetical protein JCGZ_14711 [Jatropha curcas]
4 Hb_001148_100 0.1676381299 - - -
5 Hb_002539_040 0.1681657937 - - SPFH domain-containing protein 2 precursor, putative [Ricinus communis]
6 Hb_002151_060 0.1762210068 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
7 Hb_001486_350 0.1771153693 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
8 Hb_032972_010 0.1771184424 - - Glycolipid transfer protein, putative [Ricinus communis]
9 Hb_000696_070 0.1781566044 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
10 Hb_048476_060 0.1791373668 - - PREDICTED: CRAL-TRIO domain-containing protein YKL091C-like isoform X2 [Jatropha curcas]
11 Hb_002498_270 0.1860203213 - - prephenate dehydratase, putative [Ricinus communis]
12 Hb_000806_130 0.1891426063 - - Adenosine kinase 2 [Theobroma cacao]
13 Hb_000317_420 0.1896074391 - - PREDICTED: extradiol ring-cleavage dioxygenase [Jatropha curcas]
14 Hb_000345_080 0.1915241533 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
15 Hb_148130_020 0.1926079936 - - -
16 Hb_003207_020 0.1946628303 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
17 Hb_000671_130 0.1946925688 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
18 Hb_026527_010 0.1948145697 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
19 Hb_166053_010 0.1958243343 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
20 Hb_020805_140 0.196194933 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]

Gene co-expression network

sample Hb_000027_210 Hb_000027_210 Hb_002781_050 Hb_002781_050 Hb_000027_210--Hb_002781_050 Hb_001148_090 Hb_001148_090 Hb_000027_210--Hb_001148_090 Hb_001148_100 Hb_001148_100 Hb_000027_210--Hb_001148_100 Hb_002539_040 Hb_002539_040 Hb_000027_210--Hb_002539_040 Hb_002151_060 Hb_002151_060 Hb_000027_210--Hb_002151_060 Hb_001486_350 Hb_001486_350 Hb_000027_210--Hb_001486_350 Hb_000696_070 Hb_000696_070 Hb_002781_050--Hb_000696_070 Hb_003602_020 Hb_003602_020 Hb_002781_050--Hb_003602_020 Hb_002781_050--Hb_001148_100 Hb_002781_050--Hb_001148_090 Hb_001369_630 Hb_001369_630 Hb_002781_050--Hb_001369_630 Hb_048476_060 Hb_048476_060 Hb_002781_050--Hb_048476_060 Hb_000172_280 Hb_000172_280 Hb_001148_090--Hb_000172_280 Hb_000889_010 Hb_000889_010 Hb_001148_090--Hb_000889_010 Hb_004607_070 Hb_004607_070 Hb_001148_090--Hb_004607_070 Hb_001946_310 Hb_001946_310 Hb_001148_090--Hb_001946_310 Hb_001148_090--Hb_002539_040 Hb_001148_100--Hb_000696_070 Hb_000175_470 Hb_000175_470 Hb_001148_100--Hb_000175_470 Hb_001148_100--Hb_002151_060 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_100--Hb_001148_090 Hb_005408_070 Hb_005408_070 Hb_002539_040--Hb_005408_070 Hb_002539_040--Hb_000175_470 Hb_000567_180 Hb_000567_180 Hb_002539_040--Hb_000567_180 Hb_002539_040--Hb_000889_010 Hb_002539_040--Hb_001148_100 Hb_000806_130 Hb_000806_130 Hb_002151_060--Hb_000806_130 Hb_002151_060--Hb_000696_070 Hb_002151_060--Hb_001486_350 Hb_002151_060--Hb_002781_050 Hb_000236_190 Hb_000236_190 Hb_002151_060--Hb_000236_190 Hb_001486_350--Hb_000806_130 Hb_001486_350--Hb_000696_070 Hb_001486_350--Hb_000236_190 Hb_012707_010 Hb_012707_010 Hb_001486_350--Hb_012707_010 Hb_001486_350--Hb_002781_050 Hb_000300_420 Hb_000300_420 Hb_001486_350--Hb_000300_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.141148 0.625027 1.26279 7.75697 0.337216 0.328557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66364 2.22144 0.430068 2.64492 2.36709

CAGE analysis