Hb_002200_070

Information

Type -
Description -
Location Contig2200: 60991-63424
Sequence    

Annotation

kegg
ID rcu:RCOM_0137830
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_010999860.1
description PREDICTED: endoglucanase 9-like [Populus euphratica]
swissprot
ID Q38890
description Endoglucanase 25 OS=Arabidopsis thaliana GN=KOR PE=1 SV=1
trembl
ID B9SJI2
description Endo-1,4-beta-glucanase, putative OS=Ricinus communis GN=RCOM_0137830 PE=4 SV=1
Gene Ontology
ID GO:0008810
description endoglucanase 25-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22680: 61780-61960 , PASA_asmbl_22681: 64293-64715
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_070 0.0 - - PREDICTED: endoglucanase 9-like [Populus euphratica]
2 Hb_001621_100 0.1255784132 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4 [Jatropha curcas]
3 Hb_000861_100 0.1285042087 - - PREDICTED: probable fucosyltransferase 8 isoform X1 [Jatropha curcas]
4 Hb_031089_020 0.1298023604 - - Nodulation receptor kinase precursor, putative [Ricinus communis]
5 Hb_003371_070 0.1415087384 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
6 Hb_000057_130 0.1473456692 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
7 Hb_003470_110 0.1497728895 - - unnamed protein product [Vitis vinifera]
8 Hb_132840_160 0.1513489375 - - conserved hypothetical protein [Ricinus communis]
9 Hb_010672_030 0.1529809036 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
10 Hb_000339_020 0.1576521981 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
11 Hb_026527_010 0.1607383779 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
12 Hb_002781_050 0.1668266038 - - cytochrome B5 isoform 1, putative [Ricinus communis]
13 Hb_002759_070 0.1674797038 - - PREDICTED: nucleobase-ascorbate transporter 7 [Jatropha curcas]
14 Hb_147245_010 0.1674823338 - - casein kinase, putative [Ricinus communis]
15 Hb_000216_050 0.1689966962 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
16 Hb_003462_080 0.1693498949 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
17 Hb_004241_110 0.170438711 - - Minor allergen Alt a, putative [Ricinus communis]
18 Hb_000062_660 0.1706589573 - - hypothetical protein POPTR_0009s03470g [Populus trichocarpa]
19 Hb_004522_030 0.1716298864 - - PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating 3 [Jatropha curcas]
20 Hb_012707_040 0.1719784835 - - PREDICTED: probable inactive purple acid phosphatase 29 [Jatropha curcas]

Gene co-expression network

sample Hb_002200_070 Hb_002200_070 Hb_001621_100 Hb_001621_100 Hb_002200_070--Hb_001621_100 Hb_000861_100 Hb_000861_100 Hb_002200_070--Hb_000861_100 Hb_031089_020 Hb_031089_020 Hb_002200_070--Hb_031089_020 Hb_003371_070 Hb_003371_070 Hb_002200_070--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_002200_070--Hb_000057_130 Hb_003470_110 Hb_003470_110 Hb_002200_070--Hb_003470_110 Hb_000768_150 Hb_000768_150 Hb_001621_100--Hb_000768_150 Hb_001546_010 Hb_001546_010 Hb_001621_100--Hb_001546_010 Hb_001621_100--Hb_003470_110 Hb_000580_110 Hb_000580_110 Hb_001621_100--Hb_000580_110 Hb_002759_070 Hb_002759_070 Hb_001621_100--Hb_002759_070 Hb_000861_100--Hb_000057_130 Hb_007229_050 Hb_007229_050 Hb_000861_100--Hb_007229_050 Hb_000861_100--Hb_003371_070 Hb_007537_030 Hb_007537_030 Hb_000861_100--Hb_007537_030 Hb_005305_120 Hb_005305_120 Hb_000861_100--Hb_005305_120 Hb_004129_010 Hb_004129_010 Hb_000861_100--Hb_004129_010 Hb_031089_020--Hb_003470_110 Hb_084147_010 Hb_084147_010 Hb_031089_020--Hb_084147_010 Hb_001922_030 Hb_001922_030 Hb_031089_020--Hb_001922_030 Hb_004241_110 Hb_004241_110 Hb_031089_020--Hb_004241_110 Hb_030565_100 Hb_030565_100 Hb_031089_020--Hb_030565_100 Hb_002007_320 Hb_002007_320 Hb_003371_070--Hb_002007_320 Hb_003371_070--Hb_000057_130 Hb_000110_060 Hb_000110_060 Hb_003371_070--Hb_000110_060 Hb_001619_060 Hb_001619_060 Hb_003371_070--Hb_001619_060 Hb_000023_310 Hb_000023_310 Hb_003371_070--Hb_000023_310 Hb_003371_070--Hb_007537_030 Hb_001754_050 Hb_001754_050 Hb_000057_130--Hb_001754_050 Hb_000057_130--Hb_004129_010 Hb_000339_020 Hb_000339_020 Hb_000057_130--Hb_000339_020 Hb_000922_320 Hb_000922_320 Hb_000057_130--Hb_000922_320 Hb_000236_180 Hb_000236_180 Hb_003470_110--Hb_000236_180 Hb_098795_030 Hb_098795_030 Hb_003470_110--Hb_098795_030 Hb_006615_230 Hb_006615_230 Hb_003470_110--Hb_006615_230 Hb_003470_110--Hb_084147_010 Hb_003470_110--Hb_030565_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0543459 0.383982 0.582972 1.50658 0 0.0100209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.330053 0.259691 0.105412 0.524164 0.82226

CAGE analysis