Hb_029977_020

Information

Type -
Description -
Location Contig29977: 24473-26839
Sequence    

Annotation

kegg
ID rcu:RCOM_1280770
description catalytic, putative
nr
ID XP_012079773.1
description PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SCS4
description Catalytic, putative OS=Ricinus communis GN=RCOM_1280770 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029977_020 0.0 - - PREDICTED: uncharacterized protein LOC105640153 isoform X1 [Jatropha curcas]
2 Hb_005332_040 0.1413851329 - - hypothetical protein RCOM_0530890 [Ricinus communis]
3 Hb_000206_230 0.1423167876 - - conserved hypothetical protein [Ricinus communis]
4 Hb_014508_010 0.1480334658 - - PREDICTED: uncharacterized protein LOC105629998 [Jatropha curcas]
5 Hb_010672_050 0.1503287123 - - PREDICTED: probable beta-1,3-galactosyltransferase 2 isoform X3 [Jatropha curcas]
6 Hb_004052_100 0.152947533 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
7 Hb_003299_020 0.1621897049 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
8 Hb_061222_010 0.1634237167 - - hypothetical protein RCOM_0012650 [Ricinus communis]
9 Hb_001329_070 0.1659530344 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
10 Hb_000025_160 0.1662061177 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
11 Hb_003371_070 0.1669769027 - - PREDICTED: citrate synthase, mitochondrial [Jatropha curcas]
12 Hb_143766_080 0.1693352156 - - PREDICTED: uncharacterized protein LOC105637797 isoform X1 [Jatropha curcas]
13 Hb_007101_260 0.1703979234 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
14 Hb_000175_470 0.172746652 - - lactoylglutathione lyase, putative [Ricinus communis]
15 Hb_001754_050 0.1731303167 - - protein arginine n-methyltransferase, putative [Ricinus communis]
16 Hb_001408_170 0.1734398667 - - PREDICTED: phosphoglycolate phosphatase 2 [Jatropha curcas]
17 Hb_002016_140 0.1737434332 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
18 Hb_005054_020 0.1747730437 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
19 Hb_011174_040 0.1760256475 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000928_120 0.1764778906 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]

Gene co-expression network

sample Hb_029977_020 Hb_029977_020 Hb_005332_040 Hb_005332_040 Hb_029977_020--Hb_005332_040 Hb_000206_230 Hb_000206_230 Hb_029977_020--Hb_000206_230 Hb_014508_010 Hb_014508_010 Hb_029977_020--Hb_014508_010 Hb_010672_050 Hb_010672_050 Hb_029977_020--Hb_010672_050 Hb_004052_100 Hb_004052_100 Hb_029977_020--Hb_004052_100 Hb_003299_020 Hb_003299_020 Hb_029977_020--Hb_003299_020 Hb_002686_260 Hb_002686_260 Hb_005332_040--Hb_002686_260 Hb_000754_070 Hb_000754_070 Hb_005332_040--Hb_000754_070 Hb_001148_100 Hb_001148_100 Hb_005332_040--Hb_001148_100 Hb_002200_070 Hb_002200_070 Hb_005332_040--Hb_002200_070 Hb_005408_070 Hb_005408_070 Hb_005332_040--Hb_005408_070 Hb_001329_070 Hb_001329_070 Hb_000206_230--Hb_001329_070 Hb_002016_140 Hb_002016_140 Hb_000206_230--Hb_002016_140 Hb_011242_050 Hb_011242_050 Hb_000206_230--Hb_011242_050 Hb_002007_320 Hb_002007_320 Hb_000206_230--Hb_002007_320 Hb_000310_120 Hb_000310_120 Hb_000206_230--Hb_000310_120 Hb_013405_070 Hb_013405_070 Hb_000206_230--Hb_013405_070 Hb_000740_150 Hb_000740_150 Hb_014508_010--Hb_000740_150 Hb_014508_010--Hb_004052_100 Hb_001408_170 Hb_001408_170 Hb_014508_010--Hb_001408_170 Hb_133799_010 Hb_133799_010 Hb_014508_010--Hb_133799_010 Hb_001250_130 Hb_001250_130 Hb_014508_010--Hb_001250_130 Hb_005333_080 Hb_005333_080 Hb_010672_050--Hb_005333_080 Hb_010672_050--Hb_003299_020 Hb_001019_160 Hb_001019_160 Hb_010672_050--Hb_001019_160 Hb_012760_090 Hb_012760_090 Hb_010672_050--Hb_012760_090 Hb_000735_060 Hb_000735_060 Hb_010672_050--Hb_000735_060 Hb_011174_040 Hb_011174_040 Hb_010672_050--Hb_011174_040 Hb_004052_100--Hb_001408_170 Hb_004052_100--Hb_011174_040 Hb_004052_100--Hb_001329_070 Hb_004052_100--Hb_003299_020 Hb_003398_040 Hb_003398_040 Hb_004052_100--Hb_003398_040 Hb_001377_530 Hb_001377_530 Hb_004052_100--Hb_001377_530 Hb_005545_020 Hb_005545_020 Hb_003299_020--Hb_005545_020 Hb_000753_110 Hb_000753_110 Hb_003299_020--Hb_000753_110 Hb_003299_020--Hb_001377_530 Hb_000009_420 Hb_000009_420 Hb_003299_020--Hb_000009_420 Hb_003299_020--Hb_003398_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0484557 1.17735 2.97753 4.40143 0.0429459 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.306464 1.04474 0.551964 1.60564 1.45233

CAGE analysis