Hb_003398_040

Information

Type -
Description -
Location Contig3398: 114188-120316
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20950g
description actin/actin-like family protein
nr
ID XP_012088935.1
description PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
swissprot
ID Q940Z2
description Actin-related protein 5 OS=Arabidopsis thaliana GN=ARP5 PE=1 SV=2
trembl
ID A0A067LJT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01435 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003398_040 0.0 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
2 Hb_000310_060 0.0791147447 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
3 Hb_000009_420 0.0926236784 - - PREDICTED: uncharacterized protein LOC105639614 isoform X2 [Jatropha curcas]
4 Hb_001587_040 0.0959425192 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
5 Hb_005527_060 0.0979635641 - - malic enzyme, putative [Ricinus communis]
6 Hb_010868_040 0.1068348303 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
7 Hb_000753_110 0.1135818353 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X6 [Jatropha curcas]
8 Hb_001377_530 0.1143574651 - - NC domain-containing family protein [Populus trichocarpa]
9 Hb_002641_120 0.1169250057 - - PREDICTED: calmodulin [Jatropha curcas]
10 Hb_000327_200 0.1206209412 - - glutathione-s-transferase omega, putative [Ricinus communis]
11 Hb_010381_040 0.1237909841 - - beta-galactosidase, putative [Ricinus communis]
12 Hb_002016_140 0.1263427489 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
13 Hb_000270_280 0.1268052123 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
14 Hb_003299_020 0.1268838348 - - PREDICTED: uncharacterized protein LOC105649783 [Jatropha curcas]
15 Hb_003050_360 0.1269820282 - - PREDICTED: tobamovirus multiplication protein 1 isoform X2 [Jatropha curcas]
16 Hb_000941_060 0.1287263583 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
17 Hb_000996_080 0.1297708437 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
18 Hb_000940_030 0.1302174534 - - PREDICTED: triosephosphate isomerase, chloroplastic [Jatropha curcas]
19 Hb_004855_020 0.1302896552 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
20 Hb_000300_100 0.1329450108 - - NADH-cytochrome b5 reductase 1 [Morus notabilis]

Gene co-expression network

sample Hb_003398_040 Hb_003398_040 Hb_000310_060 Hb_000310_060 Hb_003398_040--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_003398_040--Hb_000009_420 Hb_001587_040 Hb_001587_040 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000753_110 Hb_000753_110 Hb_003398_040--Hb_000753_110 Hb_000270_280 Hb_000270_280 Hb_000310_060--Hb_000270_280 Hb_000310_060--Hb_001587_040 Hb_000940_030 Hb_000940_030 Hb_000310_060--Hb_000940_030 Hb_000327_200 Hb_000327_200 Hb_000310_060--Hb_000327_200 Hb_000310_060--Hb_005527_060 Hb_000009_420--Hb_000753_110 Hb_000416_190 Hb_000416_190 Hb_000009_420--Hb_000416_190 Hb_000009_420--Hb_000310_060 Hb_000009_420--Hb_010868_040 Hb_003299_020 Hb_003299_020 Hb_000009_420--Hb_003299_020 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_002432_050 Hb_002432_050 Hb_005527_060--Hb_002432_050 Hb_000589_170 Hb_000589_170 Hb_005527_060--Hb_000589_170 Hb_000011_560 Hb_000011_560 Hb_005527_060--Hb_000011_560 Hb_004855_020 Hb_004855_020 Hb_010868_040--Hb_004855_020 Hb_000227_400 Hb_000227_400 Hb_010868_040--Hb_000227_400 Hb_010868_040--Hb_000940_030 Hb_000207_350 Hb_000207_350 Hb_010868_040--Hb_000207_350 Hb_000243_060 Hb_000243_060 Hb_010868_040--Hb_000243_060 Hb_010381_040 Hb_010381_040 Hb_010868_040--Hb_010381_040 Hb_000753_110--Hb_003299_020 Hb_002641_120 Hb_002641_120 Hb_000753_110--Hb_002641_120 Hb_000753_110--Hb_000310_060 Hb_000186_030 Hb_000186_030 Hb_000753_110--Hb_000186_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0939099 0.635905 3.34678 1.53509 0.0790075 0.097532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.325687 0.432454 0.182673 0.948657 1.5272

CAGE analysis