Hb_001269_090

Information

Type -
Description -
Location Contig1269: 143731-147897
Sequence    

Annotation

kegg
ID rcu:RCOM_0471160
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative (EC:3.6.3.6)
nr
ID XP_002527322.1
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
swissprot
ID Q42556
description ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2
trembl
ID B9SMV3
description H(\+)-transporting atpase plant/fungi plasma membrane type, putative OS=Ricinus communis GN=RCOM_0471160 PE=4 SV=1
Gene Ontology
ID GO:0005774
description atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08154: 144561-144884 , PASA_asmbl_08155: 146675-147313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001269_090 0.0 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
2 Hb_000532_150 0.1430331617 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
3 Hb_007163_050 0.1703152678 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
4 Hb_049915_010 0.1758920137 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
5 Hb_023768_010 0.183765509 - - -
6 Hb_007749_020 0.192386464 - - receptor-kinase, putative [Ricinus communis]
7 Hb_001357_280 0.1924988272 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
8 Hb_001675_290 0.1925160489 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
9 Hb_000172_230 0.1994906794 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
10 Hb_025194_070 0.2015367031 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
11 Hb_002965_180 0.2018897083 - - AMSH-like ubiquitin thioesterase 3 [Morus notabilis]
12 Hb_107658_010 0.2097676463 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
13 Hb_002597_030 0.2143336896 - - -
14 Hb_001514_250 0.2146557424 - - GAST1 protein precursor, putative [Ricinus communis]
15 Hb_002243_050 0.2153791885 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
16 Hb_000365_280 0.2156234899 - - calcium binding protein/cast, putative [Ricinus communis]
17 Hb_000069_560 0.2161613371 - - hypothetical protein POPTR_0002s16980g [Populus trichocarpa]
18 Hb_002173_030 0.2164497312 - - hypothetical protein JCGZ_12466 [Jatropha curcas]
19 Hb_000732_240 0.216721959 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]
20 Hb_150573_010 0.218661418 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001269_090 Hb_001269_090 Hb_000532_150 Hb_000532_150 Hb_001269_090--Hb_000532_150 Hb_007163_050 Hb_007163_050 Hb_001269_090--Hb_007163_050 Hb_049915_010 Hb_049915_010 Hb_001269_090--Hb_049915_010 Hb_023768_010 Hb_023768_010 Hb_001269_090--Hb_023768_010 Hb_007749_020 Hb_007749_020 Hb_001269_090--Hb_007749_020 Hb_001357_280 Hb_001357_280 Hb_001269_090--Hb_001357_280 Hb_001514_250 Hb_001514_250 Hb_000532_150--Hb_001514_250 Hb_012743_010 Hb_012743_010 Hb_000532_150--Hb_012743_010 Hb_000284_170 Hb_000284_170 Hb_000532_150--Hb_000284_170 Hb_113676_010 Hb_113676_010 Hb_000532_150--Hb_113676_010 Hb_000172_230 Hb_000172_230 Hb_000532_150--Hb_000172_230 Hb_188281_010 Hb_188281_010 Hb_007163_050--Hb_188281_010 Hb_007163_050--Hb_007749_020 Hb_002026_050 Hb_002026_050 Hb_007163_050--Hb_002026_050 Hb_000163_040 Hb_000163_040 Hb_007163_050--Hb_000163_040 Hb_000563_140 Hb_000563_140 Hb_007163_050--Hb_000563_140 Hb_007163_050--Hb_001514_250 Hb_000733_090 Hb_000733_090 Hb_049915_010--Hb_000733_090 Hb_008406_030 Hb_008406_030 Hb_049915_010--Hb_008406_030 Hb_004297_080 Hb_004297_080 Hb_049915_010--Hb_004297_080 Hb_008643_020 Hb_008643_020 Hb_049915_010--Hb_008643_020 Hb_049915_010--Hb_000172_230 Hb_002783_210 Hb_002783_210 Hb_049915_010--Hb_002783_210 Hb_002053_020 Hb_002053_020 Hb_023768_010--Hb_002053_020 Hb_025194_070 Hb_025194_070 Hb_023768_010--Hb_025194_070 Hb_002640_030 Hb_002640_030 Hb_023768_010--Hb_002640_030 Hb_001810_040 Hb_001810_040 Hb_023768_010--Hb_001810_040 Hb_000922_050 Hb_000922_050 Hb_023768_010--Hb_000922_050 Hb_003427_070 Hb_003427_070 Hb_023768_010--Hb_003427_070 Hb_001675_290 Hb_001675_290 Hb_007749_020--Hb_001675_290 Hb_036029_020 Hb_036029_020 Hb_007749_020--Hb_036029_020 Hb_003529_240 Hb_003529_240 Hb_007749_020--Hb_003529_240 Hb_007749_020--Hb_000172_230 Hb_107658_010 Hb_107658_010 Hb_007749_020--Hb_107658_010 Hb_002272_200 Hb_002272_200 Hb_007749_020--Hb_002272_200 Hb_001357_280--Hb_000532_150 Hb_017159_010 Hb_017159_010 Hb_001357_280--Hb_017159_010 Hb_000594_110 Hb_000594_110 Hb_001357_280--Hb_000594_110 Hb_000732_240 Hb_000732_240 Hb_001357_280--Hb_000732_240 Hb_001357_280--Hb_000284_170 Hb_002250_050 Hb_002250_050 Hb_001357_280--Hb_002250_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0493908 0.158747 0.164207 0.485708 0 0.0247412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0214161 0.0168511 0 0.0134024 0.0356609

CAGE analysis