Hb_036029_020

Information

Type -
Description -
Location Contig36029: 16019-18344
Sequence    

Annotation

kegg
ID rcu:RCOM_0989290
description Patellin-3, putative
nr
ID XP_012079606.1
description PREDICTED: patellin-3-like [Jatropha curcas]
swissprot
ID Q9M0R2
description Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2
trembl
ID A0A067K6B5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14978 PE=4 SV=1
Gene Ontology
ID GO:0005622
description patellin-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37115: 15871-18364
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036029_020 0.0 - - PREDICTED: patellin-3-like [Jatropha curcas]
2 Hb_071433_010 0.1049650012 - - lipid binding protein, putative [Ricinus communis]
3 Hb_001675_290 0.1105692623 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
4 Hb_007749_020 0.1172056414 - - receptor-kinase, putative [Ricinus communis]
5 Hb_000172_230 0.1195904443 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
6 Hb_002597_030 0.1218700298 - - -
7 Hb_004970_100 0.1251644036 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
8 Hb_107658_010 0.1265388869 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
9 Hb_006026_020 0.1276771869 - - PREDICTED: BTB/POZ domain-containing protein At5g48800 [Jatropha curcas]
10 Hb_000139_050 0.1281287888 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
11 Hb_004453_060 0.1304438601 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
12 Hb_000010_220 0.1316459467 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
13 Hb_001677_190 0.1330272636 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_029576_070 0.1353525792 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_011355_020 0.1369446302 - - extensin, proline-rich protein, putative [Ricinus communis]
16 Hb_000975_090 0.1369464397 - - Zeamatin precursor, putative [Ricinus communis]
17 Hb_170632_010 0.13959817 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
18 Hb_004031_050 0.1422269513 - - sinapyl alcohol dehydrogenase-like protein [Populus tremula x Populus tremuloides]
19 Hb_150573_010 0.1430169923 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
20 Hb_077694_020 0.1444624507 - - SAUR family protein [Theobroma cacao]

Gene co-expression network

sample Hb_036029_020 Hb_036029_020 Hb_071433_010 Hb_071433_010 Hb_036029_020--Hb_071433_010 Hb_001675_290 Hb_001675_290 Hb_036029_020--Hb_001675_290 Hb_007749_020 Hb_007749_020 Hb_036029_020--Hb_007749_020 Hb_000172_230 Hb_000172_230 Hb_036029_020--Hb_000172_230 Hb_002597_030 Hb_002597_030 Hb_036029_020--Hb_002597_030 Hb_004970_100 Hb_004970_100 Hb_036029_020--Hb_004970_100 Hb_011120_030 Hb_011120_030 Hb_071433_010--Hb_011120_030 Hb_019733_020 Hb_019733_020 Hb_071433_010--Hb_019733_020 Hb_000975_090 Hb_000975_090 Hb_071433_010--Hb_000975_090 Hb_005214_050 Hb_005214_050 Hb_071433_010--Hb_005214_050 Hb_170632_010 Hb_170632_010 Hb_071433_010--Hb_170632_010 Hb_001675_290--Hb_007749_020 Hb_001369_190 Hb_001369_190 Hb_001675_290--Hb_001369_190 Hb_006026_020 Hb_006026_020 Hb_001675_290--Hb_006026_020 Hb_077694_020 Hb_077694_020 Hb_001675_290--Hb_077694_020 Hb_001675_290--Hb_004970_100 Hb_003529_240 Hb_003529_240 Hb_007749_020--Hb_003529_240 Hb_007749_020--Hb_000172_230 Hb_107658_010 Hb_107658_010 Hb_007749_020--Hb_107658_010 Hb_002272_200 Hb_002272_200 Hb_007749_020--Hb_002272_200 Hb_000172_230--Hb_001675_290 Hb_008643_020 Hb_008643_020 Hb_000172_230--Hb_008643_020 Hb_076771_010 Hb_076771_010 Hb_000172_230--Hb_076771_010 Hb_001675_310 Hb_001675_310 Hb_000172_230--Hb_001675_310 Hb_029576_070 Hb_029576_070 Hb_002597_030--Hb_029576_070 Hb_017549_010 Hb_017549_010 Hb_002597_030--Hb_017549_010 Hb_001677_190 Hb_001677_190 Hb_002597_030--Hb_001677_190 Hb_000120_600 Hb_000120_600 Hb_002597_030--Hb_000120_600 Hb_001856_130 Hb_001856_130 Hb_002597_030--Hb_001856_130 Hb_004970_100--Hb_006026_020 Hb_003777_150 Hb_003777_150 Hb_004970_100--Hb_003777_150 Hb_004970_100--Hb_005214_050 Hb_000373_260 Hb_000373_260 Hb_004970_100--Hb_000373_260 Hb_001417_090 Hb_001417_090 Hb_004970_100--Hb_001417_090 Hb_004031_050 Hb_004031_050 Hb_004970_100--Hb_004031_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.975763 19.0729 26.2178 62.6451 1.30279 0.853818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0356404 5.2819 2.97858

CAGE analysis