Hb_019733_020

Information

Type -
Description -
Location Contig19733: 27299-27622
Sequence    

Annotation

kegg
ID pop:POPTR_0003s15470g
description hypothetical protein
nr
ID XP_006385856.1
description hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GJI9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19807: 27270-27473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019733_020 0.0 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
2 Hb_048987_020 0.1248903602 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
3 Hb_071433_010 0.1326054272 - - lipid binding protein, putative [Ricinus communis]
4 Hb_000039_080 0.137149342 - - cyclin d, putative [Ricinus communis]
5 Hb_000988_010 0.1379679795 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
6 Hb_087314_010 0.1465389461 - - -
7 Hb_036602_010 0.1485143664 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
8 Hb_000908_030 0.1507766967 - - small heat-shock protein, putative [Ricinus communis]
9 Hb_001518_050 0.1513180083 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_004899_380 0.1527373042 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003878_130 0.1528791488 - - -
12 Hb_000483_120 0.1531405257 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
13 Hb_179367_020 0.1556822845 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_000025_800 0.1561451631 - - hypothetical protein VITISV_020143 [Vitis vinifera]
15 Hb_003489_010 0.1567116809 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
16 Hb_185437_010 0.1573485071 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
17 Hb_006615_110 0.1584225739 transcription factor TF Family: bZIP hypothetical protein JCGZ_11777 [Jatropha curcas]
18 Hb_004732_070 0.1633928952 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001976_070 0.1650477762 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
20 Hb_000270_050 0.1654536936 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FEI 2 [Jatropha curcas]

Gene co-expression network

sample Hb_019733_020 Hb_019733_020 Hb_048987_020 Hb_048987_020 Hb_019733_020--Hb_048987_020 Hb_071433_010 Hb_071433_010 Hb_019733_020--Hb_071433_010 Hb_000039_080 Hb_000039_080 Hb_019733_020--Hb_000039_080 Hb_000988_010 Hb_000988_010 Hb_019733_020--Hb_000988_010 Hb_087314_010 Hb_087314_010 Hb_019733_020--Hb_087314_010 Hb_036602_010 Hb_036602_010 Hb_019733_020--Hb_036602_010 Hb_004899_380 Hb_004899_380 Hb_048987_020--Hb_004899_380 Hb_048987_020--Hb_087314_010 Hb_004474_020 Hb_004474_020 Hb_048987_020--Hb_004474_020 Hb_034310_020 Hb_034310_020 Hb_048987_020--Hb_034310_020 Hb_003878_130 Hb_003878_130 Hb_048987_020--Hb_003878_130 Hb_180695_010 Hb_180695_010 Hb_048987_020--Hb_180695_010 Hb_036029_020 Hb_036029_020 Hb_071433_010--Hb_036029_020 Hb_011120_030 Hb_011120_030 Hb_071433_010--Hb_011120_030 Hb_000975_090 Hb_000975_090 Hb_071433_010--Hb_000975_090 Hb_005214_050 Hb_005214_050 Hb_071433_010--Hb_005214_050 Hb_170632_010 Hb_170632_010 Hb_071433_010--Hb_170632_010 Hb_000483_120 Hb_000483_120 Hb_000039_080--Hb_000483_120 Hb_012016_050 Hb_012016_050 Hb_000039_080--Hb_012016_050 Hb_179367_020 Hb_179367_020 Hb_000039_080--Hb_179367_020 Hb_000908_030 Hb_000908_030 Hb_000039_080--Hb_000908_030 Hb_177179_020 Hb_177179_020 Hb_000039_080--Hb_177179_020 Hb_011826_010 Hb_011826_010 Hb_000039_080--Hb_011826_010 Hb_006615_110 Hb_006615_110 Hb_000988_010--Hb_006615_110 Hb_045985_010 Hb_045985_010 Hb_000988_010--Hb_045985_010 Hb_187739_010 Hb_187739_010 Hb_000988_010--Hb_187739_010 Hb_002675_210 Hb_002675_210 Hb_000988_010--Hb_002675_210 Hb_001518_050 Hb_001518_050 Hb_000988_010--Hb_001518_050 Hb_107495_060 Hb_107495_060 Hb_087314_010--Hb_107495_060 Hb_072670_010 Hb_072670_010 Hb_087314_010--Hb_072670_010 Hb_087314_010--Hb_180695_010 Hb_006721_060 Hb_006721_060 Hb_087314_010--Hb_006721_060 Hb_029576_070 Hb_029576_070 Hb_087314_010--Hb_029576_070 Hb_014549_010 Hb_014549_010 Hb_036602_010--Hb_014549_010 Hb_003489_010 Hb_003489_010 Hb_036602_010--Hb_003489_010 Hb_036602_010--Hb_000483_120 Hb_005701_100 Hb_005701_100 Hb_036602_010--Hb_005701_100 Hb_004154_010 Hb_004154_010 Hb_036602_010--Hb_004154_010 Hb_006197_010 Hb_006197_010 Hb_036602_010--Hb_006197_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.646969 1.56671 3.33306 0.123415 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11138 0

CAGE analysis