Hb_011120_030

Information

Type -
Description -
Location Contig11120: 26679-29351
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00410g
description POPTRDRAFT_668906; hypothetical protein
nr
ID XP_012077407.1
description PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9IKK1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s00410g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03451: 28494-29275 , PASA_asmbl_03452: 28748-29275
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011120_030 0.0 - - PREDICTED: uncharacterized protein LOC105638239 [Jatropha curcas]
2 Hb_071433_010 0.125856537 - - lipid binding protein, putative [Ricinus communis]
3 Hb_000270_790 0.1511345715 - - hypothetical protein JCGZ_11498 [Jatropha curcas]
4 Hb_000190_160 0.1513048018 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
5 Hb_000011_260 0.1513367921 - - conserved hypothetical protein [Ricinus communis]
6 Hb_036029_020 0.1535845515 - - PREDICTED: patellin-3-like [Jatropha curcas]
7 Hb_003777_150 0.1591016386 - - PREDICTED: uncharacterized protein LOC105640938 isoform X1 [Jatropha curcas]
8 Hb_004970_100 0.1600652926 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
9 Hb_004453_060 0.1609301516 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2 [Jatropha curcas]
10 Hb_107658_010 0.1629408975 - - PREDICTED: BTB/POZ domain-containing protein At1g03010-like isoform X2 [Jatropha curcas]
11 Hb_084304_010 0.1678408816 - - PREDICTED: probable auxin efflux carrier component 1c isoform X2 [Jatropha curcas]
12 Hb_004732_070 0.1747288955 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001675_290 0.1752786957 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
14 Hb_003427_070 0.1784601228 - - hypothetical protein POPTR_0067s00310g [Populus trichocarpa]
15 Hb_001417_090 0.1785347536 - - PREDICTED: uncharacterized protein LOC105650625 [Jatropha curcas]
16 Hb_150573_010 0.1795193099 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
17 Hb_000628_060 0.181327618 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
18 Hb_025194_070 0.1822095501 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]
19 Hb_019733_020 0.1826291266 - - hypothetical protein POPTR_0003s15470g [Populus trichocarpa]
20 Hb_007749_020 0.1826964905 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_011120_030 Hb_011120_030 Hb_071433_010 Hb_071433_010 Hb_011120_030--Hb_071433_010 Hb_000270_790 Hb_000270_790 Hb_011120_030--Hb_000270_790 Hb_000190_160 Hb_000190_160 Hb_011120_030--Hb_000190_160 Hb_000011_260 Hb_000011_260 Hb_011120_030--Hb_000011_260 Hb_036029_020 Hb_036029_020 Hb_011120_030--Hb_036029_020 Hb_003777_150 Hb_003777_150 Hb_011120_030--Hb_003777_150 Hb_071433_010--Hb_036029_020 Hb_019733_020 Hb_019733_020 Hb_071433_010--Hb_019733_020 Hb_000975_090 Hb_000975_090 Hb_071433_010--Hb_000975_090 Hb_005214_050 Hb_005214_050 Hb_071433_010--Hb_005214_050 Hb_170632_010 Hb_170632_010 Hb_071433_010--Hb_170632_010 Hb_000270_790--Hb_000011_260 Hb_000628_060 Hb_000628_060 Hb_000270_790--Hb_000628_060 Hb_000188_140 Hb_000188_140 Hb_000270_790--Hb_000188_140 Hb_084304_010 Hb_084304_010 Hb_000270_790--Hb_084304_010 Hb_001418_050 Hb_001418_050 Hb_000270_790--Hb_001418_050 Hb_045786_010 Hb_045786_010 Hb_000270_790--Hb_045786_010 Hb_004732_070 Hb_004732_070 Hb_000190_160--Hb_004732_070 Hb_089040_010 Hb_089040_010 Hb_000190_160--Hb_089040_010 Hb_004112_080 Hb_004112_080 Hb_000190_160--Hb_004112_080 Hb_039075_010 Hb_039075_010 Hb_000190_160--Hb_039075_010 Hb_000310_040 Hb_000310_040 Hb_000190_160--Hb_000310_040 Hb_030360_010 Hb_030360_010 Hb_000190_160--Hb_030360_010 Hb_020831_060 Hb_020831_060 Hb_000011_260--Hb_020831_060 Hb_107658_010 Hb_107658_010 Hb_000011_260--Hb_107658_010 Hb_001369_190 Hb_001369_190 Hb_000011_260--Hb_001369_190 Hb_004970_100 Hb_004970_100 Hb_000011_260--Hb_004970_100 Hb_006088_020 Hb_006088_020 Hb_000011_260--Hb_006088_020 Hb_001675_290 Hb_001675_290 Hb_036029_020--Hb_001675_290 Hb_007749_020 Hb_007749_020 Hb_036029_020--Hb_007749_020 Hb_000172_230 Hb_000172_230 Hb_036029_020--Hb_000172_230 Hb_002597_030 Hb_002597_030 Hb_036029_020--Hb_002597_030 Hb_036029_020--Hb_004970_100 Hb_003777_150--Hb_084304_010 Hb_003427_070 Hb_003427_070 Hb_003777_150--Hb_003427_070 Hb_003777_150--Hb_000628_060 Hb_004474_020 Hb_004474_020 Hb_003777_150--Hb_004474_020 Hb_003777_150--Hb_004970_100 Hb_069384_010 Hb_069384_010 Hb_003777_150--Hb_069384_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.5624 0.823837 3.03022 0.239525 0.0298791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126733 0.165449

CAGE analysis