Hb_000808_120

Information

Type -
Description -
Location Contig808: 127337-127734
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000808_120 0.0 - - -
2 Hb_071781_010 0.1839740456 - - hypothetical protein POPTR_0010s13190g [Populus trichocarpa]
3 Hb_005332_130 0.1884456732 - - Mavicyanin, putative [Ricinus communis]
4 Hb_002343_030 0.2137529257 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004112_060 0.2168704436 - - hypothetical protein POPTR_0017s01950g, partial [Populus trichocarpa]
6 Hb_053073_010 0.2192195222 - - -
7 Hb_013834_010 0.2318718078 - - PREDICTED: kinesin-like protein NACK2 [Jatropha curcas]
8 Hb_001329_010 0.2384126339 - - zinc finger protein, putative [Ricinus communis]
9 Hb_013344_010 0.2400821728 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
10 Hb_001459_040 0.242719814 - - Ankyrin repeat-containing protein [Medicago truncatula]
11 Hb_011609_040 0.2469913821 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
12 Hb_182249_010 0.248892985 - - -
13 Hb_000656_320 0.2501412142 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
14 Hb_032202_130 0.2510357978 - - PREDICTED: uncharacterized protein LOC105643062 [Jatropha curcas]
15 Hb_002321_040 0.2521523855 - - hypothetical protein POPTR_0019s14030g [Populus trichocarpa]
16 Hb_003894_090 0.2539896238 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001329_190 0.259759782 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
18 Hb_000105_110 0.2608238895 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
19 Hb_009372_050 0.2612521865 - - unnamed protein product [Vitis vinifera]
20 Hb_053345_010 0.2612866822 - - -

Gene co-expression network

sample Hb_000808_120 Hb_000808_120 Hb_071781_010 Hb_071781_010 Hb_000808_120--Hb_071781_010 Hb_005332_130 Hb_005332_130 Hb_000808_120--Hb_005332_130 Hb_002343_030 Hb_002343_030 Hb_000808_120--Hb_002343_030 Hb_004112_060 Hb_004112_060 Hb_000808_120--Hb_004112_060 Hb_053073_010 Hb_053073_010 Hb_000808_120--Hb_053073_010 Hb_013834_010 Hb_013834_010 Hb_000808_120--Hb_013834_010 Hb_008119_030 Hb_008119_030 Hb_071781_010--Hb_008119_030 Hb_000742_190 Hb_000742_190 Hb_071781_010--Hb_000742_190 Hb_002900_100 Hb_002900_100 Hb_071781_010--Hb_002900_100 Hb_002675_090 Hb_002675_090 Hb_071781_010--Hb_002675_090 Hb_003605_040 Hb_003605_040 Hb_071781_010--Hb_003605_040 Hb_007382_090 Hb_007382_090 Hb_005332_130--Hb_007382_090 Hb_001775_090 Hb_001775_090 Hb_005332_130--Hb_001775_090 Hb_000577_050 Hb_000577_050 Hb_005332_130--Hb_000577_050 Hb_007894_100 Hb_007894_100 Hb_005332_130--Hb_007894_100 Hb_003119_040 Hb_003119_040 Hb_005332_130--Hb_003119_040 Hb_000105_110 Hb_000105_110 Hb_002343_030--Hb_000105_110 Hb_093385_010 Hb_093385_010 Hb_002343_030--Hb_093385_010 Hb_005601_030 Hb_005601_030 Hb_002343_030--Hb_005601_030 Hb_002343_030--Hb_053073_010 Hb_000406_010 Hb_000406_010 Hb_002343_030--Hb_000406_010 Hb_001459_040 Hb_001459_040 Hb_004112_060--Hb_001459_040 Hb_002243_050 Hb_002243_050 Hb_004112_060--Hb_002243_050 Hb_004112_060--Hb_053073_010 Hb_001514_250 Hb_001514_250 Hb_004112_060--Hb_001514_250 Hb_004112_060--Hb_071781_010 Hb_001208_020 Hb_001208_020 Hb_053073_010--Hb_001208_020 Hb_002965_180 Hb_002965_180 Hb_053073_010--Hb_002965_180 Hb_053073_010--Hb_001459_040 Hb_163400_010 Hb_163400_010 Hb_053073_010--Hb_163400_010 Hb_149194_010 Hb_149194_010 Hb_053073_010--Hb_149194_010 Hb_014705_010 Hb_014705_010 Hb_053073_010--Hb_014705_010 Hb_002400_050 Hb_002400_050 Hb_013834_010--Hb_002400_050 Hb_001135_110 Hb_001135_110 Hb_013834_010--Hb_001135_110 Hb_000959_190 Hb_000959_190 Hb_013834_010--Hb_000959_190 Hb_004920_050 Hb_004920_050 Hb_013834_010--Hb_004920_050 Hb_013344_010 Hb_013344_010 Hb_013834_010--Hb_013344_010 Hb_000732_030 Hb_000732_030 Hb_013834_010--Hb_000732_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.53449 1.0544 4.49304 4.0505 0.349769 1.0558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.461991 0 0.104401 0

CAGE analysis