Hb_005601_030

Information

Type -
Description -
Location Contig5601: 53325-55032
Sequence    

Annotation

kegg
ID rcu:RCOM_1563490
description organic anion transporter, putative
nr
ID XP_002514380.1
description organic anion transporter, putative [Ricinus communis]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID B9RKW1
description Organic anion transporter, putative OS=Ricinus communis GN=RCOM_1563490 PE=4 SV=1
Gene Ontology
ID GO:0005794
description udp-galactose transporter 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005601_030 0.0 - - organic anion transporter, putative [Ricinus communis]
2 Hb_183671_010 0.1520309884 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_115832_010 0.1726267362 - - transcription factor, putative [Ricinus communis]
4 Hb_001391_050 0.1903663488 - - PREDICTED: probable carboxylesterase 18 [Jatropha curcas]
5 Hb_019181_020 0.2025834483 - - PREDICTED: uncharacterized protein LOC105763068 [Gossypium raimondii]
6 Hb_047560_010 0.2038854764 - - PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Jatropha curcas]
7 Hb_000105_110 0.2179275148 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
8 Hb_002343_030 0.2338424414 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000302_070 0.2358754712 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
10 Hb_120820_010 0.2391655566 - - PREDICTED: uncharacterized protein LOC105785094 [Gossypium raimondii]
11 Hb_006663_110 0.2432939901 - - PREDICTED: U-box domain-containing protein 34-like [Camelina sativa]
12 Hb_000723_070 0.2509628194 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_093385_010 0.2577366045 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
14 Hb_000197_170 0.2728413495 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000413_150 0.2813597594 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
16 Hb_000345_180 0.2843930582 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005276_030 0.2905949531 - - PREDICTED: probable inactive patatin-like protein 9 [Jatropha curcas]
18 Hb_001688_090 0.2939214498 - - alcohol dehydrogenase 7 [Vitis vinifera]
19 Hb_003159_060 0.294385914 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
20 Hb_007617_040 0.297407887 - - PREDICTED: syntaxin-112-like [Jatropha curcas]

Gene co-expression network

sample Hb_005601_030 Hb_005601_030 Hb_183671_010 Hb_183671_010 Hb_005601_030--Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_005601_030--Hb_115832_010 Hb_001391_050 Hb_001391_050 Hb_005601_030--Hb_001391_050 Hb_019181_020 Hb_019181_020 Hb_005601_030--Hb_019181_020 Hb_047560_010 Hb_047560_010 Hb_005601_030--Hb_047560_010 Hb_000105_110 Hb_000105_110 Hb_005601_030--Hb_000105_110 Hb_183671_010--Hb_115832_010 Hb_006663_110 Hb_006663_110 Hb_183671_010--Hb_006663_110 Hb_183671_010--Hb_019181_020 Hb_183671_010--Hb_001391_050 Hb_120820_010 Hb_120820_010 Hb_183671_010--Hb_120820_010 Hb_115832_010--Hb_006663_110 Hb_000345_180 Hb_000345_180 Hb_115832_010--Hb_000345_180 Hb_115832_010--Hb_001391_050 Hb_007617_040 Hb_007617_040 Hb_115832_010--Hb_007617_040 Hb_001391_050--Hb_047560_010 Hb_000107_260 Hb_000107_260 Hb_001391_050--Hb_000107_260 Hb_000375_140 Hb_000375_140 Hb_001391_050--Hb_000375_140 Hb_019181_020--Hb_120820_010 Hb_019181_020--Hb_115832_010 Hb_010174_050 Hb_010174_050 Hb_019181_020--Hb_010174_050 Hb_001301_140 Hb_001301_140 Hb_019181_020--Hb_001301_140 Hb_144547_010 Hb_144547_010 Hb_047560_010--Hb_144547_010 Hb_143933_010 Hb_143933_010 Hb_047560_010--Hb_143933_010 Hb_130739_010 Hb_130739_010 Hb_047560_010--Hb_130739_010 Hb_000197_170 Hb_000197_170 Hb_047560_010--Hb_000197_170 Hb_002343_030 Hb_002343_030 Hb_000105_110--Hb_002343_030 Hb_000723_070 Hb_000723_070 Hb_000105_110--Hb_000723_070 Hb_000302_070 Hb_000302_070 Hb_000105_110--Hb_000302_070 Hb_093385_010 Hb_093385_010 Hb_000105_110--Hb_093385_010 Hb_000105_110--Hb_007617_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.302085 0.0269995 0.502368 0.513431 0.0251318 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis