Hb_000302_070

Information

Type -
Description -
Location Contig302: 63151-69156
Sequence    

Annotation

kegg
ID cic:CICLE_v10006067mg
description hypothetical protein
nr
ID XP_012090163.1
description PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
swissprot
ID Q2KMM2
description Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1
trembl
ID A0A067JEE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26037 PE=4 SV=1
Gene Ontology
ID GO:0044424
description trafficking protein particle complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000302_070 0.0 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
2 Hb_006973_060 0.1646023959 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
3 Hb_000723_070 0.1944883119 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000105_110 0.2056744164 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]
5 Hb_005601_030 0.2358754712 - - organic anion transporter, putative [Ricinus communis]
6 Hb_093385_010 0.2518369233 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
7 Hb_002343_030 0.2613856318 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000413_150 0.2631303716 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
9 Hb_071116_010 0.2635055365 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
10 Hb_115832_010 0.2674072801 - - transcription factor, putative [Ricinus communis]
11 Hb_000406_010 0.2739730064 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
12 Hb_002627_070 0.279280521 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001369_680 0.279447208 - - PREDICTED: uncharacterized protein LOC105648582 [Jatropha curcas]
14 Hb_183671_010 0.2854011625 - - serine carboxypeptidase, putative [Ricinus communis]
15 Hb_002570_010 0.2965107485 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
16 Hb_133605_010 0.2968949854 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_001688_090 0.2980745962 - - alcohol dehydrogenase 7 [Vitis vinifera]
18 Hb_168241_010 0.3012876371 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
19 Hb_071379_010 0.3062326644 - - PREDICTED: mitogen-activated protein kinase kinase kinase 3-like [Nelumbo nucifera]
20 Hb_002740_070 0.3063896429 - - nitrate transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000302_070 Hb_000302_070 Hb_006973_060 Hb_006973_060 Hb_000302_070--Hb_006973_060 Hb_000723_070 Hb_000723_070 Hb_000302_070--Hb_000723_070 Hb_000105_110 Hb_000105_110 Hb_000302_070--Hb_000105_110 Hb_005601_030 Hb_005601_030 Hb_000302_070--Hb_005601_030 Hb_093385_010 Hb_093385_010 Hb_000302_070--Hb_093385_010 Hb_002343_030 Hb_002343_030 Hb_000302_070--Hb_002343_030 Hb_006973_060--Hb_000723_070 Hb_071379_010 Hb_071379_010 Hb_006973_060--Hb_071379_010 Hb_006973_060--Hb_000105_110 Hb_184109_010 Hb_184109_010 Hb_006973_060--Hb_184109_010 Hb_000866_350 Hb_000866_350 Hb_006973_060--Hb_000866_350 Hb_000723_070--Hb_000105_110 Hb_000723_070--Hb_184109_010 Hb_000723_070--Hb_000866_350 Hb_168241_010 Hb_168241_010 Hb_000723_070--Hb_168241_010 Hb_000105_110--Hb_002343_030 Hb_000105_110--Hb_093385_010 Hb_000105_110--Hb_005601_030 Hb_007617_040 Hb_007617_040 Hb_000105_110--Hb_007617_040 Hb_183671_010 Hb_183671_010 Hb_005601_030--Hb_183671_010 Hb_115832_010 Hb_115832_010 Hb_005601_030--Hb_115832_010 Hb_001391_050 Hb_001391_050 Hb_005601_030--Hb_001391_050 Hb_019181_020 Hb_019181_020 Hb_005601_030--Hb_019181_020 Hb_047560_010 Hb_047560_010 Hb_005601_030--Hb_047560_010 Hb_000406_010 Hb_000406_010 Hb_093385_010--Hb_000406_010 Hb_093385_010--Hb_002343_030 Hb_000988_010 Hb_000988_010 Hb_093385_010--Hb_000988_010 Hb_000039_080 Hb_000039_080 Hb_093385_010--Hb_000039_080 Hb_187739_010 Hb_187739_010 Hb_093385_010--Hb_187739_010 Hb_000808_120 Hb_000808_120 Hb_002343_030--Hb_000808_120 Hb_002343_030--Hb_005601_030 Hb_053073_010 Hb_053073_010 Hb_002343_030--Hb_053073_010 Hb_002343_030--Hb_000406_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.044238 0 0.105404 0.140807 0.0445247 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis