Hb_168241_010

Information

Type -
Description -
Location Contig168241: 47-1637
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14620g
description hypothetical protein
nr
ID XP_006376536.1
description hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID U5FSZ0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s14620g PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_168241_010 0.0 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
2 Hb_007017_050 0.0683496778 - - conserved hypothetical protein [Ricinus communis]
3 Hb_184109_010 0.0863575829 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
4 Hb_071116_010 0.1572719936 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
5 Hb_000556_030 0.167593394 - - PREDICTED: probable carboxylesterase 9 [Jatropha curcas]
6 Hb_000866_350 0.1726484566 - - -
7 Hb_000053_140 0.1899710553 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004092_020 0.1900405281 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 32 [Jatropha curcas]
9 Hb_002284_140 0.1900534486 - - hypothetical protein POPTR_0002s00800g [Populus trichocarpa]
10 Hb_005663_020 0.1900825847 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
11 Hb_001645_080 0.1901032077 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
12 Hb_001488_170 0.1901939488 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
13 Hb_000556_210 0.1902902383 - - hypothetical protein POPTR_0014s06640g [Populus trichocarpa]
14 Hb_000760_090 0.1903982472 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
15 Hb_005065_090 0.1904147706 - - zinc/iron transporter, putative [Ricinus communis]
16 Hb_002106_020 0.1904605113 - - PREDICTED: gibberellic acid methyltransferase 2 [Vitis vinifera]
17 Hb_183658_010 0.1906961852 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_151697_010 0.1907955283 - - clathrin assembly protein, putative [Ricinus communis]
19 Hb_009711_060 0.1908199465 - - -
20 Hb_001946_090 0.1908291978 - - -

Gene co-expression network

sample Hb_168241_010 Hb_168241_010 Hb_007017_050 Hb_007017_050 Hb_168241_010--Hb_007017_050 Hb_184109_010 Hb_184109_010 Hb_168241_010--Hb_184109_010 Hb_071116_010 Hb_071116_010 Hb_168241_010--Hb_071116_010 Hb_000556_030 Hb_000556_030 Hb_168241_010--Hb_000556_030 Hb_000866_350 Hb_000866_350 Hb_168241_010--Hb_000866_350 Hb_000053_140 Hb_000053_140 Hb_168241_010--Hb_000053_140 Hb_007017_050--Hb_184109_010 Hb_004375_090 Hb_004375_090 Hb_007017_050--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_007017_050--Hb_001104_030 Hb_141016_010 Hb_141016_010 Hb_007017_050--Hb_141016_010 Hb_009711_060 Hb_009711_060 Hb_007017_050--Hb_009711_060 Hb_184109_010--Hb_000866_350 Hb_011063_040 Hb_011063_040 Hb_184109_010--Hb_011063_040 Hb_001318_160 Hb_001318_160 Hb_184109_010--Hb_001318_160 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_002740_070 Hb_002740_070 Hb_071116_010--Hb_002740_070 Hb_001628_060 Hb_001628_060 Hb_071116_010--Hb_001628_060 Hb_071116_010--Hb_000556_030 Hb_071116_010--Hb_184109_010 Hb_071116_010--Hb_007017_050 Hb_000556_030--Hb_011063_040 Hb_000556_030--Hb_007017_050 Hb_033312_100 Hb_033312_100 Hb_000556_030--Hb_033312_100 Hb_046204_010 Hb_046204_010 Hb_000556_030--Hb_046204_010 Hb_000531_010 Hb_000531_010 Hb_000556_030--Hb_000531_010 Hb_000866_350--Hb_007017_050 Hb_000866_350--Hb_001318_160 Hb_000866_350--Hb_011063_040 Hb_000896_130 Hb_000896_130 Hb_000866_350--Hb_000896_130 Hb_005663_020 Hb_005663_020 Hb_000053_140--Hb_005663_020 Hb_001645_080 Hb_001645_080 Hb_000053_140--Hb_001645_080 Hb_001488_170 Hb_001488_170 Hb_000053_140--Hb_001488_170 Hb_004092_020 Hb_004092_020 Hb_000053_140--Hb_004092_020 Hb_002284_140 Hb_002284_140 Hb_000053_140--Hb_002284_140 Hb_000760_090 Hb_000760_090 Hb_000053_140--Hb_000760_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0960537 0.0772711 0.0131077 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis