Hb_071116_010

Information

Type -
Description -
Location Contig71116: 422-1000
Sequence    

Annotation

kegg
ID sly:104648339
description uncharacterized LOC104648339
nr
ID XP_012453109.1
description PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NIH9
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_19136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071116_010 0.0 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
2 Hb_002740_070 0.1567645818 - - nitrate transporter, putative [Ricinus communis]
3 Hb_168241_010 0.1572719936 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
4 Hb_001628_060 0.1828298049 - - PREDICTED: beta-galactosidase 13-like isoform X2 [Jatropha curcas]
5 Hb_000556_030 0.212547969 - - PREDICTED: probable carboxylesterase 9 [Jatropha curcas]
6 Hb_184109_010 0.2153494614 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
7 Hb_007017_050 0.2211936771 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002228_130 0.22449385 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000230_310 0.2317168865 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_002675_210 0.2347286167 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
11 Hb_099538_010 0.2476739174 - - unnamed protein product [Vitis vinifera]
12 Hb_001488_120 0.2478809222 - - hypothetical protein JCGZ_19930 [Jatropha curcas]
13 Hb_000679_290 0.2556150557 transcription factor TF Family: AUX/IAA ATP binding protein, putative [Ricinus communis]
14 Hb_000302_070 0.2635055365 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
15 Hb_045985_010 0.2694052254 - - hypothetical protein JCGZ_00291 [Jatropha curcas]
16 Hb_000988_010 0.2756558141 - - hypothetical protein POPTR_0004s17730g [Populus trichocarpa]
17 Hb_000866_350 0.2766564454 - - -
18 Hb_001862_080 0.2776627329 - - hypothetical protein RCOM_1154950 [Ricinus communis]
19 Hb_002805_100 0.2790821701 - - Receptor-like protein 12 [Morus notabilis]
20 Hb_000105_110 0.2795061316 - - hypothetical protein, partial [Fervidibacteria bacterium SCGC AAA471-D06]

Gene co-expression network

sample Hb_071116_010 Hb_071116_010 Hb_002740_070 Hb_002740_070 Hb_071116_010--Hb_002740_070 Hb_168241_010 Hb_168241_010 Hb_071116_010--Hb_168241_010 Hb_001628_060 Hb_001628_060 Hb_071116_010--Hb_001628_060 Hb_000556_030 Hb_000556_030 Hb_071116_010--Hb_000556_030 Hb_184109_010 Hb_184109_010 Hb_071116_010--Hb_184109_010 Hb_007017_050 Hb_007017_050 Hb_071116_010--Hb_007017_050 Hb_000230_310 Hb_000230_310 Hb_002740_070--Hb_000230_310 Hb_000553_070 Hb_000553_070 Hb_002740_070--Hb_000553_070 Hb_001862_080 Hb_001862_080 Hb_002740_070--Hb_001862_080 Hb_034589_010 Hb_034589_010 Hb_002740_070--Hb_034589_010 Hb_002228_130 Hb_002228_130 Hb_002740_070--Hb_002228_130 Hb_168241_010--Hb_007017_050 Hb_168241_010--Hb_184109_010 Hb_168241_010--Hb_000556_030 Hb_000866_350 Hb_000866_350 Hb_168241_010--Hb_000866_350 Hb_000053_140 Hb_000053_140 Hb_168241_010--Hb_000053_140 Hb_001628_060--Hb_002228_130 Hb_001488_120 Hb_001488_120 Hb_001628_060--Hb_001488_120 Hb_000032_110 Hb_000032_110 Hb_001628_060--Hb_000032_110 Hb_002918_100 Hb_002918_100 Hb_001628_060--Hb_002918_100 Hb_023930_010 Hb_023930_010 Hb_001628_060--Hb_023930_010 Hb_184500_020 Hb_184500_020 Hb_001628_060--Hb_184500_020 Hb_011063_040 Hb_011063_040 Hb_000556_030--Hb_011063_040 Hb_000556_030--Hb_007017_050 Hb_033312_100 Hb_033312_100 Hb_000556_030--Hb_033312_100 Hb_046204_010 Hb_046204_010 Hb_000556_030--Hb_046204_010 Hb_000531_010 Hb_000531_010 Hb_000556_030--Hb_000531_010 Hb_184109_010--Hb_000866_350 Hb_184109_010--Hb_007017_050 Hb_184109_010--Hb_011063_040 Hb_001318_160 Hb_001318_160 Hb_184109_010--Hb_001318_160 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_004375_090 Hb_004375_090 Hb_007017_050--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_007017_050--Hb_001104_030 Hb_141016_010 Hb_141016_010 Hb_007017_050--Hb_141016_010 Hb_009711_060 Hb_009711_060 Hb_007017_050--Hb_009711_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.104817 0.142849 0.0461204 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis