Hb_011063_040

Information

Type -
Description -
Location Contig11063: 11829-17562
Sequence    

Annotation

kegg
ID vvi:100853799
description uncharacterized LOC100853799
nr
ID XP_003635528.2
description PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID B9S6Q9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0872030 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011063_040 0.0 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
2 Hb_000556_030 0.1268556452 - - PREDICTED: probable carboxylesterase 9 [Jatropha curcas]
3 Hb_184109_010 0.1683872246 - - PREDICTED: transcription factor WER-like [Jatropha curcas]
4 Hb_104034_010 0.1737321941 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 [Pyrus x bretschneideri]
5 Hb_000866_350 0.1829204336 - - -
6 Hb_168241_010 0.1953470764 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
7 Hb_007017_050 0.1970347203 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001384_030 0.1974616573 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
9 Hb_001205_280 0.1980461418 - - PREDICTED: probable polyol transporter 6 [Jatropha curcas]
10 Hb_074674_010 0.1983383021 - - Cell division cycle protein cdt2, putative [Ricinus communis]
11 Hb_061361_010 0.200118718 - - kinase, putative [Ricinus communis]
12 Hb_023386_070 0.2011639851 - - PREDICTED: probable pectinesterase 68 [Jatropha curcas]
13 Hb_000025_770 0.2012812051 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
14 Hb_010021_060 0.2102307159 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
15 Hb_003368_070 0.2111480677 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
16 Hb_005066_050 0.2130140793 - - -
17 Hb_000176_040 0.2134288261 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR3 isoform X2 [Jatropha curcas]
18 Hb_010369_020 0.2143589126 - - hypothetical protein JCGZ_21088 [Jatropha curcas]
19 Hb_000347_310 0.2149087828 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
20 Hb_046204_010 0.2168448315 - - PREDICTED: peroxidase 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_011063_040 Hb_011063_040 Hb_000556_030 Hb_000556_030 Hb_011063_040--Hb_000556_030 Hb_184109_010 Hb_184109_010 Hb_011063_040--Hb_184109_010 Hb_104034_010 Hb_104034_010 Hb_011063_040--Hb_104034_010 Hb_000866_350 Hb_000866_350 Hb_011063_040--Hb_000866_350 Hb_168241_010 Hb_168241_010 Hb_011063_040--Hb_168241_010 Hb_007017_050 Hb_007017_050 Hb_011063_040--Hb_007017_050 Hb_000556_030--Hb_168241_010 Hb_000556_030--Hb_007017_050 Hb_033312_100 Hb_033312_100 Hb_000556_030--Hb_033312_100 Hb_046204_010 Hb_046204_010 Hb_000556_030--Hb_046204_010 Hb_000531_010 Hb_000531_010 Hb_000556_030--Hb_000531_010 Hb_184109_010--Hb_168241_010 Hb_184109_010--Hb_000866_350 Hb_184109_010--Hb_007017_050 Hb_001318_160 Hb_001318_160 Hb_184109_010--Hb_001318_160 Hb_004994_270 Hb_004994_270 Hb_184109_010--Hb_004994_270 Hb_010021_060 Hb_010021_060 Hb_104034_010--Hb_010021_060 Hb_006120_140 Hb_006120_140 Hb_104034_010--Hb_006120_140 Hb_000621_100 Hb_000621_100 Hb_104034_010--Hb_000621_100 Hb_000321_040 Hb_000321_040 Hb_104034_010--Hb_000321_040 Hb_000000_040 Hb_000000_040 Hb_104034_010--Hb_000000_040 Hb_000866_350--Hb_168241_010 Hb_000866_350--Hb_007017_050 Hb_000866_350--Hb_001318_160 Hb_000896_130 Hb_000896_130 Hb_000866_350--Hb_000896_130 Hb_168241_010--Hb_007017_050 Hb_071116_010 Hb_071116_010 Hb_168241_010--Hb_071116_010 Hb_000053_140 Hb_000053_140 Hb_168241_010--Hb_000053_140 Hb_004375_090 Hb_004375_090 Hb_007017_050--Hb_004375_090 Hb_001104_030 Hb_001104_030 Hb_007017_050--Hb_001104_030 Hb_141016_010 Hb_141016_010 Hb_007017_050--Hb_141016_010 Hb_009711_060 Hb_009711_060 Hb_007017_050--Hb_009711_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0558216 0.0269499 0.00690691 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00523063 0

CAGE analysis