Hb_000896_130

Information

Type transcription factor
Description TF Family: CPP
Location Contig896: 100797-123172
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26740g
description POPTRDRAFT_763473; cysteine-rich polycomb-like family protein
nr
ID XP_002309611.2
description cysteine-rich polycomb-like family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HA26
description Cysteine-rich polycomb-like family protein OS=Populus trichocarpa GN=POPTR_0006s26740g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61777: 121542-121744 , PASA_asmbl_61778: 122285-122816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_130 0.0 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
2 Hb_002613_030 0.1159662873 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
3 Hb_144649_010 0.1466158237 - - 60S ribosomal protein L34A [Hevea brasiliensis]
4 Hb_003762_010 0.1635123947 - - -
5 Hb_002486_090 0.1683817 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
6 Hb_000083_110 0.1814271436 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_001318_160 0.1925057299 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_000164_030 0.2055563648 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
9 Hb_064971_010 0.208622727 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_048141_060 0.2107249779 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
11 Hb_004724_250 0.2111120733 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
12 Hb_005016_180 0.2130918603 - - phosphoglycerate kinase, putative [Ricinus communis]
13 Hb_000866_350 0.2143707421 - - -
14 Hb_002362_010 0.2150699611 - - hypothetical protein JCGZ_12328 [Jatropha curcas]
15 Hb_006142_020 0.2197451148 - - JHL25P11.12 [Jatropha curcas]
16 Hb_034310_010 0.2209541681 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
17 Hb_000157_060 0.2220869185 - - PREDICTED: polyamine oxidase 1 isoform X1 [Jatropha curcas]
18 Hb_005649_070 0.2233235748 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000668_190 0.2295746524 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
20 Hb_002267_010 0.2308870741 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]

Gene co-expression network

sample Hb_000896_130 Hb_000896_130 Hb_002613_030 Hb_002613_030 Hb_000896_130--Hb_002613_030 Hb_144649_010 Hb_144649_010 Hb_000896_130--Hb_144649_010 Hb_003762_010 Hb_003762_010 Hb_000896_130--Hb_003762_010 Hb_002486_090 Hb_002486_090 Hb_000896_130--Hb_002486_090 Hb_000083_110 Hb_000083_110 Hb_000896_130--Hb_000083_110 Hb_001318_160 Hb_001318_160 Hb_000896_130--Hb_001318_160 Hb_002613_030--Hb_002486_090 Hb_004724_250 Hb_004724_250 Hb_002613_030--Hb_004724_250 Hb_000164_030 Hb_000164_030 Hb_002613_030--Hb_000164_030 Hb_064971_010 Hb_064971_010 Hb_002613_030--Hb_064971_010 Hb_048141_060 Hb_048141_060 Hb_002613_030--Hb_048141_060 Hb_002362_010 Hb_002362_010 Hb_144649_010--Hb_002362_010 Hb_005649_070 Hb_005649_070 Hb_144649_010--Hb_005649_070 Hb_108744_010 Hb_108744_010 Hb_144649_010--Hb_108744_010 Hb_000756_030 Hb_000756_030 Hb_144649_010--Hb_000756_030 Hb_004241_140 Hb_004241_140 Hb_144649_010--Hb_004241_140 Hb_152528_010 Hb_152528_010 Hb_144649_010--Hb_152528_010 Hb_003762_010--Hb_002613_030 Hb_052764_120 Hb_052764_120 Hb_003762_010--Hb_052764_120 Hb_005348_130 Hb_005348_130 Hb_003762_010--Hb_005348_130 Hb_010578_020 Hb_010578_020 Hb_003762_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_003762_010--Hb_003207_220 Hb_002486_090--Hb_064971_010 Hb_000668_190 Hb_000668_190 Hb_002486_090--Hb_000668_190 Hb_002486_090--Hb_000164_030 Hb_006142_020 Hb_006142_020 Hb_002486_090--Hb_006142_020 Hb_000739_250 Hb_000739_250 Hb_002486_090--Hb_000739_250 Hb_103339_010 Hb_103339_010 Hb_000083_110--Hb_103339_010 Hb_001279_050 Hb_001279_050 Hb_000083_110--Hb_001279_050 Hb_002307_040 Hb_002307_040 Hb_000083_110--Hb_002307_040 Hb_028487_120 Hb_028487_120 Hb_000083_110--Hb_028487_120 Hb_000960_120 Hb_000960_120 Hb_000083_110--Hb_000960_120 Hb_000083_110--Hb_002613_030 Hb_001318_160--Hb_002362_010 Hb_001318_160--Hb_144649_010 Hb_184109_010 Hb_184109_010 Hb_001318_160--Hb_184109_010 Hb_000866_350 Hb_000866_350 Hb_001318_160--Hb_000866_350 Hb_001318_160--Hb_000756_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00648492 0.066006 0.0118839 0.00736588 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis