Hb_003762_010

Information

Type -
Description -
Location Contig3762: 6105-7419
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003762_010 0.0 - - -
2 Hb_002613_030 0.1390185949 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
3 Hb_000896_130 0.1635123947 transcription factor TF Family: CPP cysteine-rich polycomb-like family protein [Populus trichocarpa]
4 Hb_052764_120 0.165357638 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
5 Hb_005348_130 0.1671555495 - - PREDICTED: pollen receptor-like kinase 3 [Jatropha curcas]
6 Hb_010578_020 0.1677138768 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_003207_220 0.1774667767 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
8 Hb_002435_010 0.180873985 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
9 Hb_002267_010 0.1820350794 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
10 Hb_002999_150 0.1912763861 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
11 Hb_005686_100 0.1939581378 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004724_250 0.1950265843 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
13 Hb_048141_060 0.1962802629 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
14 Hb_148146_030 0.2067756458 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
15 Hb_000069_250 0.2084010427 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
16 Hb_071654_010 0.2085336868 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
17 Hb_000164_030 0.210489242 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
18 Hb_107174_010 0.2125648009 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_002486_090 0.2156424619 - - hypothetical protein POPTR_0005s06910g [Populus trichocarpa]
20 Hb_000280_100 0.2191995445 - - hypothetical protein JCGZ_13378 [Jatropha curcas]

Gene co-expression network

sample Hb_003762_010 Hb_003762_010 Hb_002613_030 Hb_002613_030 Hb_003762_010--Hb_002613_030 Hb_000896_130 Hb_000896_130 Hb_003762_010--Hb_000896_130 Hb_052764_120 Hb_052764_120 Hb_003762_010--Hb_052764_120 Hb_005348_130 Hb_005348_130 Hb_003762_010--Hb_005348_130 Hb_010578_020 Hb_010578_020 Hb_003762_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_003762_010--Hb_003207_220 Hb_002486_090 Hb_002486_090 Hb_002613_030--Hb_002486_090 Hb_004724_250 Hb_004724_250 Hb_002613_030--Hb_004724_250 Hb_002613_030--Hb_000896_130 Hb_000164_030 Hb_000164_030 Hb_002613_030--Hb_000164_030 Hb_064971_010 Hb_064971_010 Hb_002613_030--Hb_064971_010 Hb_048141_060 Hb_048141_060 Hb_002613_030--Hb_048141_060 Hb_144649_010 Hb_144649_010 Hb_000896_130--Hb_144649_010 Hb_000896_130--Hb_002486_090 Hb_000083_110 Hb_000083_110 Hb_000896_130--Hb_000083_110 Hb_001318_160 Hb_001318_160 Hb_000896_130--Hb_001318_160 Hb_002267_010 Hb_002267_010 Hb_052764_120--Hb_002267_010 Hb_052764_120--Hb_010578_020 Hb_002435_010 Hb_002435_010 Hb_052764_120--Hb_002435_010 Hb_052764_120--Hb_003207_220 Hb_002999_150 Hb_002999_150 Hb_052764_120--Hb_002999_150 Hb_052764_120--Hb_048141_060 Hb_148146_030 Hb_148146_030 Hb_005348_130--Hb_148146_030 Hb_009554_020 Hb_009554_020 Hb_005348_130--Hb_009554_020 Hb_007970_030 Hb_007970_030 Hb_005348_130--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_005348_130--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_005348_130--Hb_000116_340 Hb_010578_020--Hb_004724_250 Hb_010578_020--Hb_002435_010 Hb_010578_020--Hb_048141_060 Hb_010578_020--Hb_002267_010 Hb_010578_020--Hb_000164_030 Hb_003207_220--Hb_002999_150 Hb_003207_220--Hb_002435_010 Hb_003207_220--Hb_002267_010 Hb_107174_010 Hb_107174_010 Hb_003207_220--Hb_107174_010 Hb_003207_220--Hb_010578_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0903147 0.441102 0.0299706 0.0295895 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis