Hb_002999_150

Information

Type -
Description -
Location Contig2999: 128632-129072
Sequence    

Annotation

kegg
ID vvi:100248178
description probable calcium-binding protein CML30
nr
ID XP_012068338.1
description PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
swissprot
ID Q9MBG5
description Probable calcium-binding protein CML30 OS=Arabidopsis thaliana GN=CML30 PE=2 SV=1
trembl
ID A0A067L211
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15620 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_150 0.0 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
2 Hb_003207_220 0.0679138558 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
3 Hb_107174_010 0.069010673 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_052764_120 0.082260363 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
5 Hb_002267_010 0.0857621531 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
6 Hb_071654_010 0.0866263631 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
7 Hb_007894_040 0.1052705195 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
8 Hb_012146_010 0.1062079246 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
9 Hb_010223_010 0.1066725602 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
10 Hb_002435_010 0.1167872568 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
11 Hb_055877_010 0.1209188118 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
12 Hb_000251_170 0.1295986821 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
13 Hb_000192_030 0.1327770149 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]
14 Hb_007747_070 0.1363313792 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
15 Hb_116420_050 0.1380573336 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
16 Hb_127372_010 0.1401108465 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
17 Hb_048141_060 0.1411098098 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
18 Hb_000953_180 0.1412056677 - - -
19 Hb_021142_030 0.1441748 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
20 Hb_010578_020 0.1489312403 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002999_150 Hb_002999_150 Hb_003207_220 Hb_003207_220 Hb_002999_150--Hb_003207_220 Hb_107174_010 Hb_107174_010 Hb_002999_150--Hb_107174_010 Hb_052764_120 Hb_052764_120 Hb_002999_150--Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_002999_150--Hb_002267_010 Hb_071654_010 Hb_071654_010 Hb_002999_150--Hb_071654_010 Hb_007894_040 Hb_007894_040 Hb_002999_150--Hb_007894_040 Hb_003207_220--Hb_052764_120 Hb_002435_010 Hb_002435_010 Hb_003207_220--Hb_002435_010 Hb_003207_220--Hb_002267_010 Hb_003207_220--Hb_107174_010 Hb_010578_020 Hb_010578_020 Hb_003207_220--Hb_010578_020 Hb_010223_010 Hb_010223_010 Hb_107174_010--Hb_010223_010 Hb_000192_030 Hb_000192_030 Hb_107174_010--Hb_000192_030 Hb_107174_010--Hb_007894_040 Hb_107174_010--Hb_071654_010 Hb_052764_120--Hb_002267_010 Hb_052764_120--Hb_010578_020 Hb_052764_120--Hb_002435_010 Hb_048141_060 Hb_048141_060 Hb_052764_120--Hb_048141_060 Hb_002267_010--Hb_071654_010 Hb_002267_010--Hb_048141_060 Hb_000164_030 Hb_000164_030 Hb_002267_010--Hb_000164_030 Hb_002267_010--Hb_002435_010 Hb_012146_010 Hb_012146_010 Hb_071654_010--Hb_012146_010 Hb_055877_010 Hb_055877_010 Hb_071654_010--Hb_055877_010 Hb_071654_010--Hb_007894_040 Hb_007747_070 Hb_007747_070 Hb_071654_010--Hb_007747_070 Hb_007894_040--Hb_012146_010 Hb_007894_040--Hb_007747_070 Hb_007894_040--Hb_055877_010 Hb_021142_030 Hb_021142_030 Hb_007894_040--Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_007894_040--Hb_009385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.296427 0.842972 0.109461 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis