Hb_052764_120

Information

Type -
Description -
Location Contig52764: 70692-72602
Sequence    

Annotation

kegg
ID pxb:103941142
description uncharacterized LOC103941142
nr
ID XP_009349611.1
description PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID S8C4A4
description Uncharacterized protein OS=Genlisea aurea GN=M569_13313 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_052764_120 0.0 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
2 Hb_002267_010 0.0458844131 - - hypothetical protein SORBIDRAFT_01g040370 [Sorghum bicolor]
3 Hb_010578_020 0.0692335748 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_002435_010 0.0757887781 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
5 Hb_003207_220 0.0774889696 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
6 Hb_002999_150 0.082260363 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
7 Hb_048141_060 0.0834895939 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT3 [Populus euphratica]
8 Hb_071654_010 0.0937477834 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
9 Hb_004724_250 0.1003360149 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_000164_030 0.1096205088 - - PREDICTED: RING-H2 finger protein ATL14-like [Zea mays]
11 Hb_012146_010 0.135736455 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
12 Hb_055877_010 0.1394909557 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_107174_010 0.1423114601 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_007894_040 0.1457787067 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
15 Hb_000668_190 0.1471046486 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
16 Hb_000251_170 0.1564959035 - - leucine-rich repeat transmembrane protein kinase, putative [Ricinus communis]
17 Hb_005649_070 0.1575736318 - - conserved hypothetical protein [Ricinus communis]
18 Hb_116420_050 0.1580301493 - - PREDICTED: ACT domain-containing protein ACR1 [Jatropha curcas]
19 Hb_002534_040 0.1599159791 - - Calmodulin, putative [Ricinus communis]
20 Hb_000280_100 0.1602244043 - - hypothetical protein JCGZ_13378 [Jatropha curcas]

Gene co-expression network

sample Hb_052764_120 Hb_052764_120 Hb_002267_010 Hb_002267_010 Hb_052764_120--Hb_002267_010 Hb_010578_020 Hb_010578_020 Hb_052764_120--Hb_010578_020 Hb_002435_010 Hb_002435_010 Hb_052764_120--Hb_002435_010 Hb_003207_220 Hb_003207_220 Hb_052764_120--Hb_003207_220 Hb_002999_150 Hb_002999_150 Hb_052764_120--Hb_002999_150 Hb_048141_060 Hb_048141_060 Hb_052764_120--Hb_048141_060 Hb_071654_010 Hb_071654_010 Hb_002267_010--Hb_071654_010 Hb_002267_010--Hb_048141_060 Hb_000164_030 Hb_000164_030 Hb_002267_010--Hb_000164_030 Hb_002267_010--Hb_002999_150 Hb_002267_010--Hb_002435_010 Hb_004724_250 Hb_004724_250 Hb_010578_020--Hb_004724_250 Hb_010578_020--Hb_002435_010 Hb_010578_020--Hb_048141_060 Hb_010578_020--Hb_002267_010 Hb_010578_020--Hb_000164_030 Hb_002435_010--Hb_003207_220 Hb_002435_010--Hb_048141_060 Hb_000668_190 Hb_000668_190 Hb_002435_010--Hb_000668_190 Hb_003207_220--Hb_002999_150 Hb_003207_220--Hb_002267_010 Hb_107174_010 Hb_107174_010 Hb_003207_220--Hb_107174_010 Hb_003207_220--Hb_010578_020 Hb_002999_150--Hb_107174_010 Hb_002999_150--Hb_071654_010 Hb_007894_040 Hb_007894_040 Hb_002999_150--Hb_007894_040 Hb_048141_060--Hb_000164_030 Hb_048141_060--Hb_004724_250 Hb_048141_060--Hb_071654_010 Hb_005649_070 Hb_005649_070 Hb_048141_060--Hb_005649_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0211821 0.0978128 0.0100986 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis