Hb_182291_020

Information

Type -
Description -
Location Contig182291: 17057-17359
Sequence    

Annotation

kegg
ID cic:CICLE_v10029871mg
description hypothetical protein
nr
ID XP_006423537.1
description hypothetical protein CICLE_v10029871mg [Citrus clementina]
swissprot
ID P33083
description Auxin-induced protein 6B OS=Glycine max PE=2 SV=1
trembl
ID V4S8K9
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029871mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182291_020 0.0 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
2 Hb_007970_030 0.0030086262 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
3 Hb_000116_340 0.0034587548 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
4 Hb_003767_020 0.0277809114 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
5 Hb_000160_340 0.0367508575 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_002893_140 0.05254496 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
7 Hb_009554_020 0.0764038638 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
8 Hb_000073_070 0.0782251687 - - -
9 Hb_000495_090 0.0792986113 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_105632_010 0.0853111909 - - -
11 Hb_005743_020 0.0853294325 - - -
12 Hb_001274_060 0.1166917324 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
13 Hb_000380_030 0.1215244624 - - Kiwellin, putative [Ricinus communis]
14 Hb_000787_120 0.1237899436 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
15 Hb_003633_110 0.1249597307 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
16 Hb_001459_070 0.1289214141 - - -
17 Hb_107725_010 0.1341253304 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
18 Hb_005015_040 0.1414649346 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
19 Hb_055235_010 0.1558329894 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_028707_060 0.1749356667 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_182291_020 Hb_182291_020 Hb_007970_030 Hb_007970_030 Hb_182291_020--Hb_007970_030 Hb_000116_340 Hb_000116_340 Hb_182291_020--Hb_000116_340 Hb_003767_020 Hb_003767_020 Hb_182291_020--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_182291_020--Hb_000160_340 Hb_002893_140 Hb_002893_140 Hb_182291_020--Hb_002893_140 Hb_009554_020 Hb_009554_020 Hb_182291_020--Hb_009554_020 Hb_007970_030--Hb_000116_340 Hb_007970_030--Hb_003767_020 Hb_007970_030--Hb_000160_340 Hb_007970_030--Hb_002893_140 Hb_007970_030--Hb_009554_020 Hb_000116_340--Hb_003767_020 Hb_000116_340--Hb_000160_340 Hb_000116_340--Hb_002893_140 Hb_000073_070 Hb_000073_070 Hb_000116_340--Hb_000073_070 Hb_003767_020--Hb_000160_340 Hb_003767_020--Hb_002893_140 Hb_003767_020--Hb_000073_070 Hb_000160_340--Hb_002893_140 Hb_000160_340--Hb_000073_070 Hb_002893_140--Hb_000073_070 Hb_000495_090 Hb_000495_090 Hb_002893_140--Hb_000495_090 Hb_105632_010 Hb_105632_010 Hb_002893_140--Hb_105632_010 Hb_005743_020 Hb_005743_020 Hb_002893_140--Hb_005743_020 Hb_005015_040 Hb_005015_040 Hb_009554_020--Hb_005015_040 Hb_009554_020--Hb_000116_340 Hb_009554_020--Hb_003767_020 Hb_009554_020--Hb_000160_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.14311 0.638725 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis