Hb_005743_020

Information

Type -
Description -
Location Contig5743: 14279-15099
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49615: 14293-14759
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005743_020 0.0 - - -
2 Hb_105632_010 1.83229e-05 - - -
3 Hb_000495_090 0.0060560308 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000073_070 0.0071336056 - - -
5 Hb_001274_060 0.0315449288 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
6 Hb_002893_140 0.0328790357 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
7 Hb_000380_030 0.0364130156 - - Kiwellin, putative [Ricinus communis]
8 Hb_000787_120 0.0386956976 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
9 Hb_003633_110 0.0398745209 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
10 Hb_001459_070 0.043867581 - - -
11 Hb_000160_340 0.0486789985 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
12 Hb_107725_010 0.0491145009 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
13 Hb_003767_020 0.0576397203 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
14 Hb_055235_010 0.0710225121 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_000116_340 0.0818874657 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
16 Hb_182291_020 0.0853294325 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
17 Hb_007970_030 0.0883221374 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
18 Hb_003813_150 0.1099144573 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
19 Hb_034468_010 0.1124889561 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
20 Hb_028707_060 0.1144349117 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_005743_020 Hb_005743_020 Hb_105632_010 Hb_105632_010 Hb_005743_020--Hb_105632_010 Hb_000495_090 Hb_000495_090 Hb_005743_020--Hb_000495_090 Hb_000073_070 Hb_000073_070 Hb_005743_020--Hb_000073_070 Hb_001274_060 Hb_001274_060 Hb_005743_020--Hb_001274_060 Hb_002893_140 Hb_002893_140 Hb_005743_020--Hb_002893_140 Hb_000380_030 Hb_000380_030 Hb_005743_020--Hb_000380_030 Hb_105632_010--Hb_000495_090 Hb_105632_010--Hb_000073_070 Hb_105632_010--Hb_001274_060 Hb_105632_010--Hb_002893_140 Hb_105632_010--Hb_000380_030 Hb_000495_090--Hb_000073_070 Hb_000495_090--Hb_002893_140 Hb_000495_090--Hb_001274_060 Hb_000495_090--Hb_000380_030 Hb_000073_070--Hb_002893_140 Hb_000073_070--Hb_001274_060 Hb_000160_340 Hb_000160_340 Hb_000073_070--Hb_000160_340 Hb_001274_060--Hb_000380_030 Hb_000787_120 Hb_000787_120 Hb_001274_060--Hb_000787_120 Hb_003633_110 Hb_003633_110 Hb_001274_060--Hb_003633_110 Hb_001459_070 Hb_001459_070 Hb_001274_060--Hb_001459_070 Hb_107725_010 Hb_107725_010 Hb_001274_060--Hb_107725_010 Hb_002893_140--Hb_000160_340 Hb_003767_020 Hb_003767_020 Hb_002893_140--Hb_003767_020 Hb_000380_030--Hb_000787_120 Hb_000380_030--Hb_003633_110 Hb_000380_030--Hb_001459_070 Hb_000380_030--Hb_107725_010 Hb_055235_010 Hb_055235_010 Hb_000380_030--Hb_055235_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0293899 0.0807909 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis