Hb_000380_030

Information

Type -
Description -
Location Contig380: 31678-32088
Sequence    

Annotation

kegg
ID rcu:RCOM_0544940
description Kiwellin, putative
nr
ID XP_002529427.1
description Kiwellin, putative [Ricinus communis]
swissprot
ID P84527
description Kiwellin OS=Actinidia deliciosa PE=1 SV=1
trembl
ID B9STV8
description Kiwellin, putative OS=Ricinus communis GN=RCOM_0544940 PE=4 SV=1
Gene Ontology
ID GO:0005576
description kiwellin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_030 0.0 - - Kiwellin, putative [Ricinus communis]
2 Hb_000787_120 0.0022842577 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
3 Hb_003633_110 0.003463964 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
4 Hb_001274_060 0.0048708501 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
5 Hb_001459_070 0.0074603629 - - -
6 Hb_107725_010 0.0127124762 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_055235_010 0.0346517131 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_005743_020 0.0364130156 - - -
9 Hb_105632_010 0.036431326 - - -
10 Hb_000495_090 0.0424641959 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_000073_070 0.0435407546 - - -
12 Hb_002893_140 0.0692475557 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
13 Hb_003813_150 0.0736343515 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
14 Hb_034468_010 0.0762163419 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
15 Hb_000160_340 0.0850093846 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_003767_020 0.0939432678 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
17 Hb_028707_060 0.0998429692 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
18 Hb_001627_020 0.1039819521 - - -
19 Hb_000083_030 0.1067629585 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
20 Hb_000116_340 0.1180981851 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000380_030 Hb_000380_030 Hb_000787_120 Hb_000787_120 Hb_000380_030--Hb_000787_120 Hb_003633_110 Hb_003633_110 Hb_000380_030--Hb_003633_110 Hb_001274_060 Hb_001274_060 Hb_000380_030--Hb_001274_060 Hb_001459_070 Hb_001459_070 Hb_000380_030--Hb_001459_070 Hb_107725_010 Hb_107725_010 Hb_000380_030--Hb_107725_010 Hb_055235_010 Hb_055235_010 Hb_000380_030--Hb_055235_010 Hb_000787_120--Hb_003633_110 Hb_000787_120--Hb_001459_070 Hb_000787_120--Hb_001274_060 Hb_000787_120--Hb_107725_010 Hb_000787_120--Hb_055235_010 Hb_003633_110--Hb_001459_070 Hb_003633_110--Hb_001274_060 Hb_003633_110--Hb_107725_010 Hb_003633_110--Hb_055235_010 Hb_001274_060--Hb_001459_070 Hb_001274_060--Hb_107725_010 Hb_005743_020 Hb_005743_020 Hb_001274_060--Hb_005743_020 Hb_001459_070--Hb_107725_010 Hb_001459_070--Hb_055235_010 Hb_107725_010--Hb_055235_010 Hb_003813_150 Hb_003813_150 Hb_055235_010--Hb_003813_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0847412 0.192659 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis