Hb_107725_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig107725: 3408-5506
Sequence    

Annotation

kegg
ID rcu:RCOM_0128280
description r2r3-myb transcription factor, putative
nr
ID XP_002530124.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9SVV5
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0128280 PE=4 SV=1
Gene Ontology
ID GO:0003677
description r2r3-myb transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_107725_010 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_001459_070 0.0052523422 - - -
3 Hb_003633_110 0.0092487001 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
4 Hb_000787_120 0.0104283585 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
5 Hb_000380_030 0.0127124762 - - Kiwellin, putative [Ricinus communis]
6 Hb_001274_060 0.0175828189 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
7 Hb_055235_010 0.0219435501 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_005743_020 0.0491145009 - - -
9 Hb_105632_010 0.0491328015 - - -
10 Hb_000495_090 0.0551621716 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_000073_070 0.056238053 - - -
12 Hb_003813_150 0.0609463396 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
13 Hb_034468_010 0.063530195 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
14 Hb_002893_140 0.0819237377 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
15 Hb_001627_020 0.0913197719 - - -
16 Hb_000083_030 0.0941035627 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
17 Hb_028707_060 0.0974411588 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
18 Hb_000160_340 0.0976676709 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_003767_020 0.1065896316 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
20 Hb_000116_340 0.1307054499 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_107725_010 Hb_107725_010 Hb_001459_070 Hb_001459_070 Hb_107725_010--Hb_001459_070 Hb_003633_110 Hb_003633_110 Hb_107725_010--Hb_003633_110 Hb_000787_120 Hb_000787_120 Hb_107725_010--Hb_000787_120 Hb_000380_030 Hb_000380_030 Hb_107725_010--Hb_000380_030 Hb_001274_060 Hb_001274_060 Hb_107725_010--Hb_001274_060 Hb_055235_010 Hb_055235_010 Hb_107725_010--Hb_055235_010 Hb_001459_070--Hb_003633_110 Hb_001459_070--Hb_000787_120 Hb_001459_070--Hb_000380_030 Hb_001459_070--Hb_001274_060 Hb_001459_070--Hb_055235_010 Hb_003633_110--Hb_000787_120 Hb_003633_110--Hb_000380_030 Hb_003633_110--Hb_001274_060 Hb_003633_110--Hb_055235_010 Hb_000787_120--Hb_000380_030 Hb_000787_120--Hb_001274_060 Hb_000787_120--Hb_055235_010 Hb_000380_030--Hb_001274_060 Hb_000380_030--Hb_055235_010 Hb_005743_020 Hb_005743_020 Hb_001274_060--Hb_005743_020 Hb_003813_150 Hb_003813_150 Hb_055235_010--Hb_003813_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0648984 0.138317 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis