Hb_000787_120

Information

Type -
Description -
Location Contig787: 137263-141892
Sequence    

Annotation

kegg
ID rcu:RCOM_1547790
description 2S sulfur-rich seed storage protein precursor large subunit, putative
nr
ID XP_002515708.1
description 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
swissprot
ID P15460
description 2S seed storage protein 4 OS=Arabidopsis thaliana GN=AT2S4 PE=2 SV=1
trembl
ID B9RPN9
description 2S sulfur-rich seed storage protein large subunit, putative OS=Ricinus communis GN=RCOM_1547790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 024_A03r.ab1: 134435-136563

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_120 0.0 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
2 Hb_003633_110 0.0011797108 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
3 Hb_000380_030 0.0022842577 - - Kiwellin, putative [Ricinus communis]
4 Hb_001459_070 0.0051761463 - - -
5 Hb_001274_060 0.0071550702 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
6 Hb_107725_010 0.0104283585 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_055235_010 0.0323686114 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_005743_020 0.0386956976 - - -
9 Hb_105632_010 0.0387140064 - - -
10 Hb_000495_090 0.0447463129 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
11 Hb_000073_070 0.0458227616 - - -
12 Hb_003813_150 0.0713552938 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
13 Hb_002893_140 0.0715260433 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
14 Hb_034468_010 0.073937647 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
15 Hb_000160_340 0.087284821 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
16 Hb_003767_020 0.0962166532 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
17 Hb_028707_060 0.0992969959 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
18 Hb_001627_020 0.1017078576 - - -
19 Hb_000083_030 0.1044893933 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
20 Hb_000116_340 0.1203647831 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_120 Hb_000787_120 Hb_003633_110 Hb_003633_110 Hb_000787_120--Hb_003633_110 Hb_000380_030 Hb_000380_030 Hb_000787_120--Hb_000380_030 Hb_001459_070 Hb_001459_070 Hb_000787_120--Hb_001459_070 Hb_001274_060 Hb_001274_060 Hb_000787_120--Hb_001274_060 Hb_107725_010 Hb_107725_010 Hb_000787_120--Hb_107725_010 Hb_055235_010 Hb_055235_010 Hb_000787_120--Hb_055235_010 Hb_003633_110--Hb_000380_030 Hb_003633_110--Hb_001459_070 Hb_003633_110--Hb_001274_060 Hb_003633_110--Hb_107725_010 Hb_003633_110--Hb_055235_010 Hb_000380_030--Hb_001274_060 Hb_000380_030--Hb_001459_070 Hb_000380_030--Hb_107725_010 Hb_000380_030--Hb_055235_010 Hb_001459_070--Hb_107725_010 Hb_001459_070--Hb_001274_060 Hb_001459_070--Hb_055235_010 Hb_001274_060--Hb_107725_010 Hb_005743_020 Hb_005743_020 Hb_001274_060--Hb_005743_020 Hb_107725_010--Hb_055235_010 Hb_003813_150 Hb_003813_150 Hb_055235_010--Hb_003813_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0247539 0.0556253 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis