Hb_003813_150

Information

Type -
Description -
Location Contig3813: 100258-102589
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09690g
description POPTRDRAFT_856090; hypothetical protein
nr
ID XP_002305172.2
description hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H315
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09690g PE=4 SV=2
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003813_150 0.0 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
2 Hb_034468_010 0.0025878678 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
3 Hb_001627_020 0.0304398046 - - -
4 Hb_000083_030 0.0332317354 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
5 Hb_055235_010 0.0390244515 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_107725_010 0.0609463396 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_001459_070 0.0661896614 - - -
8 Hb_003633_110 0.0701781337 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
9 Hb_000787_120 0.0713552938 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
10 Hb_000380_030 0.0736343515 - - Kiwellin, putative [Ricinus communis]
11 Hb_001274_060 0.0784929161 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
12 Hb_000815_180 0.0899448892 - - -
13 Hb_156637_010 0.0975829659 - - PREDICTED: aldose reductase-like [Camelina sativa]
14 Hb_011549_020 0.0986987881 - - -
15 Hb_086063_030 0.1065830856 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
16 Hb_007966_010 0.1072969396 - - carbohydrate binding protein, putative [Ricinus communis]
17 Hb_028707_060 0.1080337069 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
18 Hb_005743_020 0.1099144573 - - -
19 Hb_105632_010 0.1099326762 - - -
20 Hb_001740_020 0.1105643238 - - hypothetical protein JCGZ_23765 [Jatropha curcas]

Gene co-expression network

sample Hb_003813_150 Hb_003813_150 Hb_034468_010 Hb_034468_010 Hb_003813_150--Hb_034468_010 Hb_001627_020 Hb_001627_020 Hb_003813_150--Hb_001627_020 Hb_000083_030 Hb_000083_030 Hb_003813_150--Hb_000083_030 Hb_055235_010 Hb_055235_010 Hb_003813_150--Hb_055235_010 Hb_107725_010 Hb_107725_010 Hb_003813_150--Hb_107725_010 Hb_001459_070 Hb_001459_070 Hb_003813_150--Hb_001459_070 Hb_034468_010--Hb_001627_020 Hb_034468_010--Hb_000083_030 Hb_034468_010--Hb_055235_010 Hb_034468_010--Hb_107725_010 Hb_034468_010--Hb_001459_070 Hb_001627_020--Hb_000083_030 Hb_000815_180 Hb_000815_180 Hb_001627_020--Hb_000815_180 Hb_156637_010 Hb_156637_010 Hb_001627_020--Hb_156637_010 Hb_011549_020 Hb_011549_020 Hb_001627_020--Hb_011549_020 Hb_000083_030--Hb_000815_180 Hb_000083_030--Hb_156637_010 Hb_000083_030--Hb_011549_020 Hb_055235_010--Hb_107725_010 Hb_055235_010--Hb_001459_070 Hb_003633_110 Hb_003633_110 Hb_055235_010--Hb_003633_110 Hb_000787_120 Hb_000787_120 Hb_055235_010--Hb_000787_120 Hb_000380_030 Hb_000380_030 Hb_055235_010--Hb_000380_030 Hb_107725_010--Hb_001459_070 Hb_107725_010--Hb_003633_110 Hb_107725_010--Hb_000787_120 Hb_107725_010--Hb_000380_030 Hb_001274_060 Hb_001274_060 Hb_107725_010--Hb_001274_060 Hb_001459_070--Hb_003633_110 Hb_001459_070--Hb_000787_120 Hb_001459_070--Hb_000380_030 Hb_001459_070--Hb_001274_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0150731 0.0237818 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis