Hb_001627_020

Information

Type -
Description -
Location Contig1627: 55073-55363
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001627_020 0.0 - - -
2 Hb_000083_030 0.002792972 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
3 Hb_034468_010 0.0278527598 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
4 Hb_003813_150 0.0304398046 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
5 Hb_000815_180 0.0595635866 - - -
6 Hb_156637_010 0.0672145672 - - PREDICTED: aldose reductase-like [Camelina sativa]
7 Hb_011549_020 0.0683323753 - - -
8 Hb_055235_010 0.069432457 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_086063_030 0.0762314358 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
10 Hb_007966_010 0.0769466895 - - carbohydrate binding protein, putative [Ricinus communis]
11 Hb_001740_020 0.0802206141 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
12 Hb_000266_090 0.0821454789 - - -
13 Hb_004785_110 0.0881194769 - - -
14 Hb_000603_060 0.0881604099 - - putative gag protein [Coffea canephora]
15 Hb_000473_130 0.0881702327 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
16 Hb_095589_010 0.0882946546 - - Ankyrin repeat family protein, putative [Theobroma cacao]
17 Hb_052135_040 0.0885620059 - - -
18 Hb_000963_100 0.0886235045 - - Protein SUA5, putative [Ricinus communis]
19 Hb_072376_010 0.0889027093 - - -
20 Hb_107725_010 0.0913197719 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001627_020 Hb_001627_020 Hb_000083_030 Hb_000083_030 Hb_001627_020--Hb_000083_030 Hb_034468_010 Hb_034468_010 Hb_001627_020--Hb_034468_010 Hb_003813_150 Hb_003813_150 Hb_001627_020--Hb_003813_150 Hb_000815_180 Hb_000815_180 Hb_001627_020--Hb_000815_180 Hb_156637_010 Hb_156637_010 Hb_001627_020--Hb_156637_010 Hb_011549_020 Hb_011549_020 Hb_001627_020--Hb_011549_020 Hb_000083_030--Hb_034468_010 Hb_000083_030--Hb_003813_150 Hb_000083_030--Hb_000815_180 Hb_000083_030--Hb_156637_010 Hb_000083_030--Hb_011549_020 Hb_034468_010--Hb_003813_150 Hb_055235_010 Hb_055235_010 Hb_034468_010--Hb_055235_010 Hb_107725_010 Hb_107725_010 Hb_034468_010--Hb_107725_010 Hb_001459_070 Hb_001459_070 Hb_034468_010--Hb_001459_070 Hb_003813_150--Hb_055235_010 Hb_003813_150--Hb_107725_010 Hb_003813_150--Hb_001459_070 Hb_000815_180--Hb_156637_010 Hb_000815_180--Hb_011549_020 Hb_086063_030 Hb_086063_030 Hb_000815_180--Hb_086063_030 Hb_007966_010 Hb_007966_010 Hb_000815_180--Hb_007966_010 Hb_001740_020 Hb_001740_020 Hb_000815_180--Hb_001740_020 Hb_000266_090 Hb_000266_090 Hb_000815_180--Hb_000266_090 Hb_156637_010--Hb_011549_020 Hb_156637_010--Hb_086063_030 Hb_156637_010--Hb_007966_010 Hb_156637_010--Hb_001740_020 Hb_156637_010--Hb_000266_090 Hb_011549_020--Hb_086063_030 Hb_011549_020--Hb_007966_010 Hb_011549_020--Hb_001740_020 Hb_011549_020--Hb_000266_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.55792 3.48741 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis