Hb_001740_020

Information

Type -
Description -
Location Contig1740: 53859-54296
Sequence    

Annotation

kegg
ID rcu:RCOM_0574890
description hypothetical protein
nr
ID KDP42823.1
description hypothetical protein JCGZ_23765 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6I2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23765 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001740_020 0.0 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
2 Hb_000266_090 0.0019292778 - - -
3 Hb_007966_010 0.0032809578 - - carbohydrate binding protein, putative [Ricinus communis]
4 Hb_086063_030 0.0039976688 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
5 Hb_004785_110 0.0079182836 - - -
6 Hb_000603_060 0.0079593263 - - putative gag protein [Coffea canephora]
7 Hb_000473_130 0.0079691754 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
8 Hb_095589_010 0.0080939313 - - Ankyrin repeat family protein, putative [Theobroma cacao]
9 Hb_052135_040 0.0083620033 - - -
10 Hb_000963_100 0.0084236682 - - Protein SUA5, putative [Ricinus communis]
11 Hb_072376_010 0.0087036308 - - -
12 Hb_011549_020 0.0119109339 - - -
13 Hb_156637_010 0.0130304723 - - PREDICTED: aldose reductase-like [Camelina sativa]
14 Hb_019429_010 0.0137393674 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000815_180 0.0206914323 - - -
16 Hb_173479_010 0.0347849348 - - -
17 Hb_003687_260 0.0470827756 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
18 Hb_002539_060 0.0480487072 - - -
19 Hb_049719_010 0.0520890567 - - ATP binding protein, putative [Ricinus communis]
20 Hb_081212_010 0.0593895327 - - -

Gene co-expression network

sample Hb_001740_020 Hb_001740_020 Hb_000266_090 Hb_000266_090 Hb_001740_020--Hb_000266_090 Hb_007966_010 Hb_007966_010 Hb_001740_020--Hb_007966_010 Hb_086063_030 Hb_086063_030 Hb_001740_020--Hb_086063_030 Hb_004785_110 Hb_004785_110 Hb_001740_020--Hb_004785_110 Hb_000603_060 Hb_000603_060 Hb_001740_020--Hb_000603_060 Hb_000473_130 Hb_000473_130 Hb_001740_020--Hb_000473_130 Hb_000266_090--Hb_007966_010 Hb_000266_090--Hb_086063_030 Hb_000266_090--Hb_004785_110 Hb_000266_090--Hb_000603_060 Hb_000266_090--Hb_000473_130 Hb_007966_010--Hb_086063_030 Hb_011549_020 Hb_011549_020 Hb_007966_010--Hb_011549_020 Hb_156637_010 Hb_156637_010 Hb_007966_010--Hb_156637_010 Hb_007966_010--Hb_004785_110 Hb_086063_030--Hb_011549_020 Hb_086063_030--Hb_156637_010 Hb_086063_030--Hb_004785_110 Hb_004785_110--Hb_000603_060 Hb_004785_110--Hb_000473_130 Hb_095589_010 Hb_095589_010 Hb_004785_110--Hb_095589_010 Hb_052135_040 Hb_052135_040 Hb_004785_110--Hb_052135_040 Hb_000963_100 Hb_000963_100 Hb_004785_110--Hb_000963_100 Hb_072376_010 Hb_072376_010 Hb_004785_110--Hb_072376_010 Hb_000603_060--Hb_000473_130 Hb_000603_060--Hb_095589_010 Hb_000603_060--Hb_052135_040 Hb_000603_060--Hb_000963_100 Hb_000603_060--Hb_072376_010 Hb_000473_130--Hb_095589_010 Hb_000473_130--Hb_052135_040 Hb_000473_130--Hb_000963_100 Hb_000473_130--Hb_072376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.15563 2.01115 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis