Hb_086063_030

Information

Type -
Description -
Location Contig86063: 20365-21660
Sequence    

Annotation

kegg
ID mus:103974786
description pre-mRNA-processing-splicing factor 8-like
nr
ID XP_010436192.1
description PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
swissprot
ID Q99PV0
description Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2
trembl
ID M0UDC5
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0005681
description pre-mrna-processing-splicing factor 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086063_030 0.0 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
2 Hb_007966_010 0.0007167143 - - carbohydrate binding protein, putative [Ricinus communis]
3 Hb_001740_020 0.0039976688 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
4 Hb_000266_090 0.0059269307 - - -
5 Hb_011549_020 0.0079133958 - - -
6 Hb_156637_010 0.0090329666 - - PREDICTED: aldose reductase-like [Camelina sativa]
7 Hb_004785_110 0.0119158213 - - -
8 Hb_000603_060 0.0119568629 - - putative gag protein [Coffea canephora]
9 Hb_000473_130 0.0119667118 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
10 Hb_095589_010 0.0120914642 - - Ankyrin repeat family protein, putative [Theobroma cacao]
11 Hb_052135_040 0.0123595285 - - -
12 Hb_000963_100 0.0124211916 - - Protein SUA5, putative [Ricinus communis]
13 Hb_072376_010 0.012701146 - - -
14 Hb_000815_180 0.0166942423 - - -
15 Hb_019429_010 0.0177366974 - - conserved hypothetical protein [Ricinus communis]
16 Hb_173479_010 0.0387807216 - - -
17 Hb_003687_260 0.051077081 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
18 Hb_002539_060 0.0520428779 - - -
19 Hb_049719_010 0.0560826353 - - ATP binding protein, putative [Ricinus communis]
20 Hb_081212_010 0.0633819219 - - -

Gene co-expression network

sample Hb_086063_030 Hb_086063_030 Hb_007966_010 Hb_007966_010 Hb_086063_030--Hb_007966_010 Hb_001740_020 Hb_001740_020 Hb_086063_030--Hb_001740_020 Hb_000266_090 Hb_000266_090 Hb_086063_030--Hb_000266_090 Hb_011549_020 Hb_011549_020 Hb_086063_030--Hb_011549_020 Hb_156637_010 Hb_156637_010 Hb_086063_030--Hb_156637_010 Hb_004785_110 Hb_004785_110 Hb_086063_030--Hb_004785_110 Hb_007966_010--Hb_001740_020 Hb_007966_010--Hb_000266_090 Hb_007966_010--Hb_011549_020 Hb_007966_010--Hb_156637_010 Hb_007966_010--Hb_004785_110 Hb_001740_020--Hb_000266_090 Hb_001740_020--Hb_004785_110 Hb_000603_060 Hb_000603_060 Hb_001740_020--Hb_000603_060 Hb_000473_130 Hb_000473_130 Hb_001740_020--Hb_000473_130 Hb_000266_090--Hb_004785_110 Hb_000266_090--Hb_000603_060 Hb_000266_090--Hb_000473_130 Hb_011549_020--Hb_156637_010 Hb_000815_180 Hb_000815_180 Hb_011549_020--Hb_000815_180 Hb_011549_020--Hb_001740_020 Hb_011549_020--Hb_000266_090 Hb_156637_010--Hb_000815_180 Hb_156637_010--Hb_001740_020 Hb_156637_010--Hb_000266_090 Hb_004785_110--Hb_000603_060 Hb_004785_110--Hb_000473_130 Hb_095589_010 Hb_095589_010 Hb_004785_110--Hb_095589_010 Hb_052135_040 Hb_052135_040 Hb_004785_110--Hb_052135_040 Hb_000963_100 Hb_000963_100 Hb_004785_110--Hb_000963_100 Hb_072376_010 Hb_072376_010 Hb_004785_110--Hb_072376_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0206922 0.0196724 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis