Hb_001274_060

Information

Type -
Description -
Location Contig1274: 77180-82668
Sequence    

Annotation

kegg
ID gmx:102662412
description uncharacterized LOC102662412
nr
ID XP_012489880.1
description PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B2P4L7
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_043563 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001274_060 0.0 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
2 Hb_000380_030 0.0048708501 - - Kiwellin, putative [Ricinus communis]
3 Hb_000787_120 0.0071550702 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
4 Hb_003633_110 0.0083347479 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
5 Hb_001459_070 0.0123310029 - - -
6 Hb_107725_010 0.0175828189 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
7 Hb_005743_020 0.0315449288 - - -
8 Hb_105632_010 0.0315632422 - - -
9 Hb_000495_090 0.0375972153 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_000073_070 0.0386739912 - - -
11 Hb_055235_010 0.0395195301 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_002893_140 0.0643878841 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
13 Hb_003813_150 0.0784929161 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
14 Hb_000160_340 0.0801559722 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
15 Hb_034468_010 0.0810740919 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]
16 Hb_003767_020 0.0890940916 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
17 Hb_028707_060 0.101167929 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
18 Hb_001627_020 0.1088294564 - - -
19 Hb_000083_030 0.1116092909 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
20 Hb_000116_340 0.1132631228 - - PREDICTED: small acidic protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001274_060 Hb_001274_060 Hb_000380_030 Hb_000380_030 Hb_001274_060--Hb_000380_030 Hb_000787_120 Hb_000787_120 Hb_001274_060--Hb_000787_120 Hb_003633_110 Hb_003633_110 Hb_001274_060--Hb_003633_110 Hb_001459_070 Hb_001459_070 Hb_001274_060--Hb_001459_070 Hb_107725_010 Hb_107725_010 Hb_001274_060--Hb_107725_010 Hb_005743_020 Hb_005743_020 Hb_001274_060--Hb_005743_020 Hb_000380_030--Hb_000787_120 Hb_000380_030--Hb_003633_110 Hb_000380_030--Hb_001459_070 Hb_000380_030--Hb_107725_010 Hb_055235_010 Hb_055235_010 Hb_000380_030--Hb_055235_010 Hb_000787_120--Hb_003633_110 Hb_000787_120--Hb_001459_070 Hb_000787_120--Hb_107725_010 Hb_000787_120--Hb_055235_010 Hb_003633_110--Hb_001459_070 Hb_003633_110--Hb_107725_010 Hb_003633_110--Hb_055235_010 Hb_001459_070--Hb_107725_010 Hb_001459_070--Hb_055235_010 Hb_107725_010--Hb_055235_010 Hb_105632_010 Hb_105632_010 Hb_005743_020--Hb_105632_010 Hb_000495_090 Hb_000495_090 Hb_005743_020--Hb_000495_090 Hb_000073_070 Hb_000073_070 Hb_005743_020--Hb_000073_070 Hb_002893_140 Hb_002893_140 Hb_005743_020--Hb_002893_140 Hb_005743_020--Hb_000380_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.228495 0.532614 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis