Hb_000495_090

Information

Type -
Description -
Location Contig495: 169412-180681
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000495_090 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_000073_070 0.0010776004 - - -
3 Hb_105632_010 0.0060377082 - - -
4 Hb_005743_020 0.0060560308 - - -
5 Hb_002893_140 0.0268260469 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
6 Hb_001274_060 0.0375972153 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
7 Hb_000380_030 0.0424641959 - - Kiwellin, putative [Ricinus communis]
8 Hb_000160_340 0.0426302896 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_000787_120 0.0447463129 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
10 Hb_003633_110 0.0459248331 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
11 Hb_001459_070 0.049916809 - - -
12 Hb_003767_020 0.0515943207 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
13 Hb_107725_010 0.0551621716 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
14 Hb_000116_340 0.0758544568 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
15 Hb_055235_010 0.0770621149 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_182291_020 0.0792986113 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
17 Hb_007970_030 0.0822933091 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
18 Hb_003813_150 0.115933991 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]
19 Hb_028707_060 0.1177659981 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
20 Hb_034468_010 0.1185069202 - - hypothetical protein EUGRSUZ_A02374 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000495_090 Hb_000495_090 Hb_000073_070 Hb_000073_070 Hb_000495_090--Hb_000073_070 Hb_105632_010 Hb_105632_010 Hb_000495_090--Hb_105632_010 Hb_005743_020 Hb_005743_020 Hb_000495_090--Hb_005743_020 Hb_002893_140 Hb_002893_140 Hb_000495_090--Hb_002893_140 Hb_001274_060 Hb_001274_060 Hb_000495_090--Hb_001274_060 Hb_000380_030 Hb_000380_030 Hb_000495_090--Hb_000380_030 Hb_000073_070--Hb_105632_010 Hb_000073_070--Hb_005743_020 Hb_000073_070--Hb_002893_140 Hb_000073_070--Hb_001274_060 Hb_000160_340 Hb_000160_340 Hb_000073_070--Hb_000160_340 Hb_105632_010--Hb_005743_020 Hb_105632_010--Hb_001274_060 Hb_105632_010--Hb_002893_140 Hb_105632_010--Hb_000380_030 Hb_005743_020--Hb_001274_060 Hb_005743_020--Hb_002893_140 Hb_005743_020--Hb_000380_030 Hb_002893_140--Hb_000160_340 Hb_003767_020 Hb_003767_020 Hb_002893_140--Hb_003767_020 Hb_001274_060--Hb_000380_030 Hb_000787_120 Hb_000787_120 Hb_001274_060--Hb_000787_120 Hb_003633_110 Hb_003633_110 Hb_001274_060--Hb_003633_110 Hb_001459_070 Hb_001459_070 Hb_001274_060--Hb_001459_070 Hb_107725_010 Hb_107725_010 Hb_001274_060--Hb_107725_010 Hb_000380_030--Hb_000787_120 Hb_000380_030--Hb_003633_110 Hb_000380_030--Hb_001459_070 Hb_000380_030--Hb_107725_010 Hb_055235_010 Hb_055235_010 Hb_000380_030--Hb_055235_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00391122 0.0111054 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis