Hb_002893_140

Information

Type -
Description -
Location Contig2893: 103682-104325
Sequence    

Annotation

kegg
ID rcu:RCOM_1053400
description Glycine-rich cell wall structural protein precursor, putative
nr
ID XP_002514337.1
description Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKU3
description Glycine-rich cell wall structural protein, putative OS=Ricinus communis GN=RCOM_1053400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_140 0.0 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
2 Hb_000160_340 0.0158153105 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_003767_020 0.0247895587 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
4 Hb_000073_070 0.0257488748 - - -
5 Hb_000495_090 0.0268260469 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_105632_010 0.032860724 - - -
7 Hb_005743_020 0.0328790357 - - -
8 Hb_000116_340 0.0490927613 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
9 Hb_182291_020 0.05254496 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
10 Hb_007970_030 0.055547061 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
11 Hb_001274_060 0.0643878841 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
12 Hb_000380_030 0.0692475557 - - Kiwellin, putative [Ricinus communis]
13 Hb_000787_120 0.0715260433 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
14 Hb_003633_110 0.0727026393 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
15 Hb_001459_070 0.0766878472 - - -
16 Hb_107725_010 0.0819237377 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_055235_010 0.1037773191 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_009554_020 0.1285117149 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
19 Hb_028707_060 0.1347583264 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
20 Hb_003813_150 0.1425420193 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]

Gene co-expression network

sample Hb_002893_140 Hb_002893_140 Hb_000160_340 Hb_000160_340 Hb_002893_140--Hb_000160_340 Hb_003767_020 Hb_003767_020 Hb_002893_140--Hb_003767_020 Hb_000073_070 Hb_000073_070 Hb_002893_140--Hb_000073_070 Hb_000495_090 Hb_000495_090 Hb_002893_140--Hb_000495_090 Hb_105632_010 Hb_105632_010 Hb_002893_140--Hb_105632_010 Hb_005743_020 Hb_005743_020 Hb_002893_140--Hb_005743_020 Hb_000160_340--Hb_003767_020 Hb_000116_340 Hb_000116_340 Hb_000160_340--Hb_000116_340 Hb_182291_020 Hb_182291_020 Hb_000160_340--Hb_182291_020 Hb_007970_030 Hb_007970_030 Hb_000160_340--Hb_007970_030 Hb_000160_340--Hb_000073_070 Hb_003767_020--Hb_000116_340 Hb_003767_020--Hb_182291_020 Hb_003767_020--Hb_007970_030 Hb_003767_020--Hb_000073_070 Hb_000073_070--Hb_000495_090 Hb_000073_070--Hb_105632_010 Hb_000073_070--Hb_005743_020 Hb_001274_060 Hb_001274_060 Hb_000073_070--Hb_001274_060 Hb_000495_090--Hb_105632_010 Hb_000495_090--Hb_005743_020 Hb_000495_090--Hb_001274_060 Hb_000380_030 Hb_000380_030 Hb_000495_090--Hb_000380_030 Hb_105632_010--Hb_005743_020 Hb_105632_010--Hb_001274_060 Hb_105632_010--Hb_000380_030 Hb_005743_020--Hb_001274_060 Hb_005743_020--Hb_000380_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.083118 0.273264 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis