Hb_000160_340

Information

Type transcription factor
Description TF Family: bHLH
Location Contig160: 324457-325910
Sequence    

Annotation

kegg
ID rcu:RCOM_0285440
description DNA binding protein, putative
nr
ID XP_002532470.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9FJ00
description Putative transcription factor bHLH086 OS=Arabidopsis thaliana GN=BHLH86 PE=3 SV=2
trembl
ID B9T2K1
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0285440 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh086

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000160_340 0.0 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
2 Hb_003767_020 0.0089765836 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
3 Hb_002893_140 0.0158153105 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
4 Hb_000116_340 0.0332953 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
5 Hb_182291_020 0.0367508575 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
6 Hb_007970_030 0.0397561247 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
7 Hb_000073_070 0.0415538132 - - -
8 Hb_000495_090 0.0426302896 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_105632_010 0.0486607006 - - -
10 Hb_005743_020 0.0486789985 - - -
11 Hb_001274_060 0.0801559722 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
12 Hb_000380_030 0.0850093846 - - Kiwellin, putative [Ricinus communis]
13 Hb_000787_120 0.087284821 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
14 Hb_003633_110 0.0884598126 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]
15 Hb_001459_070 0.0924394422 - - -
16 Hb_107725_010 0.0976676709 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_009554_020 0.1128779255 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
18 Hb_055235_010 0.1194853701 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_028707_060 0.1461014768 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC101308915 [Fragaria vesca subsp. vesca]
20 Hb_003813_150 0.1581722731 - - hypothetical protein POPTR_0004s09690g [Populus trichocarpa]

Gene co-expression network

sample Hb_000160_340 Hb_000160_340 Hb_003767_020 Hb_003767_020 Hb_000160_340--Hb_003767_020 Hb_002893_140 Hb_002893_140 Hb_000160_340--Hb_002893_140 Hb_000116_340 Hb_000116_340 Hb_000160_340--Hb_000116_340 Hb_182291_020 Hb_182291_020 Hb_000160_340--Hb_182291_020 Hb_007970_030 Hb_007970_030 Hb_000160_340--Hb_007970_030 Hb_000073_070 Hb_000073_070 Hb_000160_340--Hb_000073_070 Hb_003767_020--Hb_000116_340 Hb_003767_020--Hb_002893_140 Hb_003767_020--Hb_182291_020 Hb_003767_020--Hb_007970_030 Hb_003767_020--Hb_000073_070 Hb_002893_140--Hb_000073_070 Hb_000495_090 Hb_000495_090 Hb_002893_140--Hb_000495_090 Hb_105632_010 Hb_105632_010 Hb_002893_140--Hb_105632_010 Hb_005743_020 Hb_005743_020 Hb_002893_140--Hb_005743_020 Hb_000116_340--Hb_182291_020 Hb_000116_340--Hb_007970_030 Hb_000116_340--Hb_002893_140 Hb_000116_340--Hb_000073_070 Hb_182291_020--Hb_007970_030 Hb_182291_020--Hb_002893_140 Hb_009554_020 Hb_009554_020 Hb_182291_020--Hb_009554_020 Hb_007970_030--Hb_002893_140 Hb_007970_030--Hb_009554_020 Hb_000073_070--Hb_000495_090 Hb_000073_070--Hb_105632_010 Hb_000073_070--Hb_005743_020 Hb_001274_060 Hb_001274_060 Hb_000073_070--Hb_001274_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0367918 0.132237 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis