Hb_005015_040

Information

Type transcription factor
Description TF Family: FAR1
Location Contig5015: 21751-23268
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023217mg
description hypothetical protein
nr
ID XP_009781959.1
description PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID A0A022RAH9
description Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a025104mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45855: 17829-21006 , PASA_asmbl_45856: 17829-20975 , PASA_asmbl_45857: 17814-21006
cDNA
(Sanger)
(ID:Location)		 028_K17.ab1: 17814-20989

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005015_040 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
2 Hb_009554_020 0.0659669374 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
3 Hb_148146_030 0.1185582412 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
4 Hb_136620_010 0.1299618646 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
5 Hb_007970_030 0.1385197944 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
6 Hb_182291_020 0.1414649346 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
7 Hb_000206_080 0.1442166145 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
8 Hb_000116_340 0.1448484296 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
9 Hb_000069_250 0.1497535858 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
10 Hb_003767_020 0.1685777804 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
11 Hb_162304_010 0.170962836 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000160_340 0.1773035314 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
13 Hb_003411_080 0.1841474268 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010578_020 0.1866566697 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_002893_140 0.1926381784 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
16 Hb_008453_120 0.1931736241 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
17 Hb_000172_500 0.1938002604 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000006_020 0.1940081598 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000015_240 0.1940081598 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000016_090 0.1940081598 - - -

Gene co-expression network

sample Hb_005015_040 Hb_005015_040 Hb_009554_020 Hb_009554_020 Hb_005015_040--Hb_009554_020 Hb_148146_030 Hb_148146_030 Hb_005015_040--Hb_148146_030 Hb_136620_010 Hb_136620_010 Hb_005015_040--Hb_136620_010 Hb_007970_030 Hb_007970_030 Hb_005015_040--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_005015_040--Hb_182291_020 Hb_000206_080 Hb_000206_080 Hb_005015_040--Hb_000206_080 Hb_009554_020--Hb_007970_030 Hb_009554_020--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_009554_020--Hb_000116_340 Hb_003767_020 Hb_003767_020 Hb_009554_020--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_009554_020--Hb_000160_340 Hb_005348_130 Hb_005348_130 Hb_148146_030--Hb_005348_130 Hb_148146_030--Hb_009554_020 Hb_148146_030--Hb_136620_010 Hb_148146_030--Hb_007970_030 Hb_000069_250 Hb_000069_250 Hb_148146_030--Hb_000069_250 Hb_136620_010--Hb_000206_080 Hb_003411_080 Hb_003411_080 Hb_136620_010--Hb_003411_080 Hb_002028_230 Hb_002028_230 Hb_136620_010--Hb_002028_230 Hb_005854_060 Hb_005854_060 Hb_136620_010--Hb_005854_060 Hb_001433_120 Hb_001433_120 Hb_136620_010--Hb_001433_120 Hb_149407_010 Hb_149407_010 Hb_136620_010--Hb_149407_010 Hb_007970_030--Hb_182291_020 Hb_007970_030--Hb_000116_340 Hb_007970_030--Hb_003767_020 Hb_007970_030--Hb_000160_340 Hb_002893_140 Hb_002893_140 Hb_007970_030--Hb_002893_140 Hb_182291_020--Hb_000116_340 Hb_182291_020--Hb_003767_020 Hb_182291_020--Hb_000160_340 Hb_182291_020--Hb_002893_140 Hb_000206_080--Hb_003411_080 Hb_000206_080--Hb_002028_230 Hb_000206_080--Hb_149407_010 Hb_162008_030 Hb_162008_030 Hb_000206_080--Hb_162008_030 Hb_000206_080--Hb_005854_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0359545 0.454771 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis